Physcomitrium patens (spreading earthmoss): 112289998
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Entry
112289998 CDS
T01041
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112289998
09123 Folding, sorting and degradation
03018 RNA degradation
112289998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112289998
03041 Spliceosome [BR:
ppp03041
]
112289998
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112289998
mRNA cycle factors
Stress granule specific factors
112289998
Spliceosome [BR:
ppp03041
]
Complex C
Other components
Complex C specific factors
112289998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RBD_DEAH11
RBD_DGKtheta
RRM_MARF1
GH97_C
Motif
Other DBs
NCBI-GeneID:
112289998
NCBI-ProteinID:
XP_024391602
UniProt:
A9TLC5
LinkDB
All DBs
Position
1:16195305..16199517
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AA seq
650 aa
AA seq
DB search
MAQTPVQVQQQAAQASAGAPPPAQFVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVC
RDLITRRSLGYAYVNYNSAQDATRALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFI
KNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGML
LNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMR
DSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQER
KERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSP
EEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQMRTSVSPAVPTSLPMYHPG
PGMSPQMPYYGQHPSGPIPLQPAAFGYQPQIIRPGGAQFPNYIGYANVPLRQGQQGQRAG
GRRGGAPQQQQQQLQQQMIQRGGNRNLRYTPNARNMPDTAVPPQGIMGAMVPVPLEIGGL
PVANVDSGVPQQPLPISALASALASAPPEQQRAMLGEQLYPLVDQLEHDYAGKVTGMLLE
MDQTEVLHLIESPEALRAKVAEAMDVLRMAQAAPVAPTDELGNLSISNAA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggctcagactccagttcaagttcagcagcaggctgcgcaggcatccgccggggcccct
ccgccggctcagtttgtctcaacttctctttacgttggtgacttggagcctaatgtgtct
gaagctcagttatacgagttgttcactcaggttgggcaagttgtatcgatccgggtctgc
cgtgatctcatcactaggcgctctttggggtatgcctacgtcaactacaacagcgctcaa
gatgctactcgtgccttggagcttctcaacttttcagttctgaacgggaatccaattcgt
atcatgttttctcatagggatcccagtattcgcaaaagcggtacagcaaatattttcata
aagaatttggacaagaccattgacaacaaggcacttcatgatacgttctctgcgtttggt
ggcatcctgtcatgcaaggtggccgttgatggttctggtcagtcaaaaggctacgggttc
gttcagttcgagcaagaagaatcagctctgacggctattgagaaagttaacggaatgctg
ttgaacgacaagcaagttttcgtcggcccttttgtacgccgtcaggaaagggatcaatca
ggtggagtttccaagtttaacaatgtttacgtgaaaaaccttggagagaatacaactgaa
gatgatctcaagaacgtatttggtgcctatggtacaatcagtagcgctgtggtgatgagg
gatagtgatggcaagtcgaagtgctttggatttgttaacttcgagcatcccgacaatgct
gctaaggctgttgaggccttaaatggtaaaaagagggatgagaaagagtggtatgtcgga
agggcacagaagaagtcagagcgggaagctgagcttcgggcgaaatttgagcaggaacgc
aaagaaaggattgaaaagtaccaaggagtaaatctttacctaaagaatttagatgatact
gttgatgatgagaagttgagggagctcttcgctgattatggaactattacatcctgcaag
gtgatgagagatccccagggccagagcagaggatctggatttgtcgcgttttcctcacct
gaggaggcaacacgagcggtaaccgaaatgaatggcaagatggtgggaagcaagcctctt
tatgtagccttggcacagcgtaaagaggagaggagggcaaggttgcaagcagctttcgca
cagatgcgaacttctgtcagtcctgccgttccaacgagtcttccaatgtatcatcctggt
ccaggcatgagtcctcagatgccttactacggacaacatccttctggacctattcctctt
cagcctgctgcatttggctatcagccacaaatcattagacctggtggagcccagtttcca
aactacatcgggtacgcgaatgttccactgagacaaggacaacaaggacagcgcgctgga
ggtagacgtggtggggcaccgcagcagcaacagcaacagctacagcagcagatgatccaa
cgaggtggaaatcggaacctccgctatactcccaatgcaagaaacatgccggatactgct
gtccctcctcagggcatcatgggtgctatggtccctgtgcctttggaaataggaggtctg
ccagttgcaaatgtcgattctggtgtacctcagcagccacttccaatcagtgcgctggct
tcggccttggcttctgctccacctgaacaacagcgagccatgcttggtgaacagctttat
ccactagtagaccagctggagcatgattatgctggcaaggtgacgggtatgcttctggag
atggatcaaactgaagttctacacttaattgaatctcctgaagccttgagggccaaggtt
gctgaagctatggacgtcttgcgcatggctcaagcggctccggttgctccaaccgacgag
ctcgggaacctctccataagcaatgcggcatga
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