Physcomitrium patens (spreading earthmoss): 112290812
Help
Entry
112290812 CDS
T01041
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00040
Pentose and glucuronate interconversions
ppp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112290812
Enzymes [BR:
ppp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112290812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
112290812
NCBI-ProteinID:
XP_024393293
LinkDB
All DBs
Position
13:1018759..1020581
Genome browser
AA seq
482 aa
AA seq
DB search
MARLALFLWILPSLVCVHLRQAHAQTGYTELLSSTTGRDYDYHDVMASLADADQTTASIS
NVLSESGQPNYEQDVDATDDAYLQEGEAGGNDPNEDGFDMVEMDDDGESSSEEDTDKSVS
PEPSRGCQTGNLVDDSWRCDPNWASRRKNLASCAIGFGRKAIGGKNGAIYVVTSPRDDNP
ANPAPGTLRYAVTRKQPLWIVFASSMIIKLKNELLITSFKTIDARGVQVRIAGGGGLRIH
KVSNVIVHGLFIHDIKATGPAKIMKSEKNVENRPRCDGDAISIFSSSNIWIDHCYLSNAA
DGLIDVIRGSNSISITNCYFTRHNKVMLLGGDASHTMDRNMHVTVAYNKFGPGLVQRMPR
IRYGNLHLVNNEYSSGWGVYPVGGSQNPTILSQGNVYNANRGNKEVTKRIDDGGPKFGGP
RTWNWRSEGDMFQSGAYFGNVPMSWSAQSYSQTVSCKSRPASMVWKMVRDAGPLNCRKGA
RC
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgagactggctctgttcctctggattctgcccagtctcgtttgcgtccatttgaga
caggctcacgcgcagactggatacacggagttgttgagctccacaacaggtcgagactac
gactatcacgacgtgatggcctccctcgctgatgctgatcagaccactgcatctatcagc
aacgttctgagcgagtccggacagcccaattatgaacaggatgtggatgcaaccgacgat
gcctacttgcaagagggggaggcgggtggtaatgatcccaatgaagatggatttgacatg
gtcgagatggacgatgatggtgagtcgagctcggaggaggacacggataagtccgtctcc
ccggaaccgtcgagaggctgtcaaactgggaacctcgttgacgattcctggaggtgtgat
cctaactgggcatctcgccggaagaacttagccagctgcgcaatcgggttcggccgaaaa
gccataggtggcaagaatggtgcgatttatgtcgtcacgtctccccgtgacgacaacccc
gcgaacccagctcctggcaccttgcgctatgccgtcacgcgtaaacaacccctgtggata
gtttttgcgtccagtatgatcatcaagctcaaaaatgagctcctgatcacaagtttcaag
accattgacgcgcgcggcgtgcaagtccgcattgccgggggtggtgggctcagaatacat
aaagtgagcaacgtcatcgtgcacggcctcttcatccacgacattaaggccaccggacca
gcaaagattatgaaatcagagaagaatgtggaaaaccgtccccgatgcgatggtgatgcg
atatcgatcttttcttctagtaacatctggatagatcactgctatctctcaaatgctgcc
gacgggctgattgatgtgattcgcggctcgaacagtatctccataactaattgctacttc
accagacataacaaggtgatgctcctgggaggagatgcgagtcacacaatggaccggaac
atgcatgttactgtggcttacaacaaattcggtcccggccttgttcagaggatgccgaga
attcgttacggaaacttgcatttggtaaacaacgagtactctagcggatggggagtatac
cctgttggtggcagtcagaatcccaccattctgtcgcaaggcaatgtgtacaacgcgaac
aggggcaacaaggaagttacgaagcgcattgacgacggagggcccaaattcggaggtcct
aggacgtggaactggagatctgagggggatatgttccagtccggcgcttactttgggaac
gtgcccatgagttggtcagctcagagttactcccaaactgttagctgcaaatctcgtcca
gcctccatggtgtggaagatggtaagagatgccggcccactcaactgtcgcaaaggagct
cgttgctga
DBGET
integrated database retrieval system
