Physcomitrium patens (spreading earthmoss): 112290942
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Entry
112290942 CDS
T01041
Name
(RefSeq) nuclear pore complex protein NUP54
KO
K14308
nuclear pore complex protein Nup54
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112290942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112290942
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112290942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
CTD
Nup54_C
Motif
Other DBs
NCBI-GeneID:
112290942
NCBI-ProteinID:
XP_024393564
UniProt:
A9RYQ9
LinkDB
All DBs
Position
14:complement(8998050..9002898)
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AA seq
486 aa
AA seq
DB search
MSLFGTPAQSSGAAMGSTPFGAGGGGLFSTPSSAAAQTSTGSVFGGGGGLFGSSTPAFGG
GLFGSTTPSTPAFGASSGGGLFGSTTPSTPAFGASSGGGLFGSSTPSIPAFGASGQQQGT
SLFGQSPSPFGQPQSTPAFGQTSAFGQAGQSPLFGGQQQQASPFNQASGGLFGQQQSNMF
QSQPSQQTNMFNSSISTQMAPVAPVVATLPDREIQAIVDAYRDDIGNPQKGFKYLLLSIT
DPAARFKPVGVSDILWAEAMNKLEGLDSMDRERLWPELVHGFKDLSRRMKLQDEAMTADV
QRLQATESNVKLLHRHFETDTLPWIQRLRQKEQELQRRLLKIMRMVEALEGKGLHMALTR
GEAKLGDHLRGLTQQLQGANAVLPRRVESLLSVSRMQVGLGGGSQSVLLGPGKIDNQSLT
EMHKVLQQQTEAISRLATVLKRDMRDIDIIHTEDTEMVDGHAFNDNGKFYGSQAVVGYAR
KFHSGF
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgtttggcaccccggcgcagtccagtggggcggccatggggtcgacgccgttt
ggagctggtggtggaggtctgttctctacgccatcctccgctgcagcgcagacttccacc
gggtcggtttttggaggtggagggggtttgttcggatcatcgacacctgcgtttggtgga
ggtctcttcggcagtactactccttcgacccctgcgtttggtgcaagtagtggtggaggt
ctcttcggcagtactactccttcgacccctgcatttggtgcaagtagcggtggaggtcta
tttgggagttctactccttccatccctgcatttggagcatcaggtcagcaacagggaacg
tctttgttcggacaatctccatcgcctttcgggcagcctcagtcgacaccagcctttgga
caaacatctgcatttggacaagctggacagagccccttgtttggaggacagcaacagcaa
gcatcaccgttcaaccaggcttcaggtggattgtttggccagcagcaatcaaatatgttt
caatcccaaccatcacagcaaacgaacatgttcaatagtagtataagtactcagatggct
ccagtagcgccagtagttgcgaccttgcctgacagagaaattcaggccattgtcgatgct
tacagggacgacatagggaatcctcaaaagggttttaagtatttgctgctcagcattact
gatccggcagcacgcttcaaacctgttggagtatcagatattctgtgggcagaagcgatg
aacaaattagaaggtttggacagcatggacagagaacgattgtggccggaattggtgcat
ggcttcaaagatctttcaagacgtatgaagctccaggatgaggcaatgacagctgatgta
caacgccttcaagcaacagagtctaatgttaaactcctccatcgccattttgaaacagat
actctaccttggatccagcggcttcgtcaaaaagagcaggagttgcaacggcgcctactt
aagatcatgagaatggttgaagctctggaaggcaaaggtttacatatggcactgactcga
ggagaggccaagttgggtgatcacttgaggggactaactcaacagcttcaaggagcgaat
gcagttttgccccgaagagtggaatcactgctttctgtatcgcgtatgcaagttggtttg
ggaggtggatcacaatcggtgcttttaggccctggaaagattgataatcaaagcctcact
gagatgcacaaggtactgcagcagcaaacagaagcaatttcacgtcttgccactgttttg
aaacgagacatgagagacatagacatcattcatacagaagatacagaaatggttgacggg
catgcattcaatgataacggaaaattttatgggagtcaagctgtggtagggtatgcgcga
aaatttcattcaggattttga
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