Physcomitrium patens (spreading earthmoss): 112291280
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Entry
112291280 CDS
T01041
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112291280
09123 Folding, sorting and degradation
03018 RNA degradation
112291280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112291280
03041 Spliceosome [BR:
ppp03041
]
112291280
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112291280
mRNA cycle factors
Stress granule specific factors
112291280
Spliceosome [BR:
ppp03041
]
Complex C
Other components
Complex C specific factors
112291280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_7
RRM_RdRP1_2
RRM_Nup35
RBD_DEAH11
RBD_DGKtheta
Phage_TAC_1
DUF5062
Motif
Other DBs
NCBI-GeneID:
112291280
NCBI-ProteinID:
XP_024394224
UniProt:
A9SVZ7
LinkDB
All DBs
Position
14:complement(2851130..2855925)
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AA seq
645 aa
AA seq
DB search
MAQAPVQQQAPAASGPAPPNFVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLI
TRRSLGYAYVNYNNAQDATRALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLD
KSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDK
QVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEG
KSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERI
EKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEAT
RAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGPAVPTSLPMYHPAGPGMG
PGMSYYGQHPPGPIPLQPAAFGYQPQLIRPGGAQFPNYMGFPNVPPLRQGQQGQRAGGRR
GGAPQQQQPQQQMIQRGGNRNFRYTTNARNTPDVAVPPQGIMGAMLPVPIEIGGVPVANA
DAGVPQQPLPISALASALASAPPEQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTE
VLHLIESPEALKAKVAEAMDVLRMAQAVPSPPTDQLGNLAIGDSA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggcaccagttcagcagcaggcaccagcagccagtggacctgcaccgcctaat
tttgtgtccacttctctctatgttggagacctagaatccactgtatccgaagctcagtta
tacgaaattttcagccaggtcgggcaagttgtatccatccgggtctgccgtgatcttatc
acccgacgttctttagggtatgcatatgtcaactacaacaacgctcaagatgctactcgt
gctttggagttgctcaacttcaacgctgtgaacggaaaaccaattcgtattatgttctcg
cacagagacccaagcattcgtaagagtggaacggcaaacatctttatcaagaatttggac
aaatctattgacaacaaggctctgcacgacacattcgctgcattcggtactattctttcg
tgcaaggttgcaactgacccttctggccagtcaaagggatatggatttgtccagtttgag
caagaagagtcagcccagactgccatcgagaaggtgaacggaatgcttctgaacgacaag
caggtttttgttgggccttttgtgcgtcgtcaggaaagggatcagtcaggagtagtttcg
aagttcaacaatgtatatgtgaaaaaccttgctgacagcactactgacgacgagctgaag
aaagtgtttgaagcttacggaccaataagcagtgctgtggtgatgagggataacgaaggc
aaatccaaatgctttggattcgttaatttcgagcatgccgatgatgccgccaaagctgtc
gaggccttgaacggcaagaagtttgacgagaaggagtggtatgttggaagagcgcagaag
aagtctgagagggaagctgagcttagggcaaaattcgagcaagaacgcaaagagaggatc
gagaagtaccaaggagtaaatttgtacctgaagaatttggacgataccatcgatgatgag
aagttgagggagattttttctgagtacggaaccattgtatcttgcaaggtgatgagagac
cctcagggtcagagccggggttctggatttgttgcattttcgtctccggatgaggccaca
cgagcggtgactgaaatgaacggcaagatggttggaagtaagcctttgtacgtagccttg
gcacagcgtaaggaggagaggaggaataggttgcaagctgcattcgctcaacgaacccct
gttggtcctgcagttccgactagccttcctatgtaccatcctgccggtccagggatgggt
ccagggatgtcttactatggacagcatcctcctggcccaatcccacttcagcctgccgcg
ttcggataccagcctcagttgatcagacctggtggggcccagtttccaaactacatggga
tttcctaatgtcccccccctcaggcagggacagcaaggacagcgtgctggaggcaggcgt
ggcggggcacctcagcagcaacagcctcagcagcaaatgattcaacggggtggtaaccgg
aacttccgatatactactaatgcgaggaacactccagatgtcgctgttcctcctcagggt
atcatgggtgctatgcttcctgttcccattgaaattggaggtgtgccagtggctaatgct
gatgctggcgttcctcagcagcctctgccaatcagtgcgcttgcttctgctttggcttct
gccccacctgagcaacagcgtgctatgcttggtgagcagctttaccctctggtggaccag
ctggagcatgattttgctggcaaggtgacgggcatgctcctggagatggatcaaactgaa
gttttgcatttaattgagtcgcccgaagccttgaaggctaaggtagctgaagccatggat
gtcttgcgtatggctcaagctgtcccatctcctccaactgaccagcttggtaaccttgcc
atcggcgattcggcttga
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