Physcomitrium patens (spreading earthmoss): 112291632
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Entry
112291632 CDS
T01041
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112291632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112291632
03012 Translation factors [BR:
ppp03012
]
112291632
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112291632
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112291632
Translation factors [BR:
ppp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112291632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
GRP
Rad17
AAA_16
T2SSE
AAA_19
NACHT
CNDH2_C
PhoH
ATPase
ATPase_2
NB-ARC
TsaE
Motif
Other DBs
NCBI-GeneID:
112291632
NCBI-ProteinID:
XP_024395087
UniProt:
A0A2K1JHI2
LinkDB
All DBs
Position
14:7860657..7868451
Genome browser
AA seq
1106 aa
AA seq
DB search
MLWRKSFVSCRAKGQLLHVVAVCTCDLRVAKLLQLFAQVLARHLLCPSISLRAAPDLSHQ
LLVCTSRGVWHASTWSSRRRGVVVAMPGGPNSQGRGRGGRGGGRGGGGGRGGGGGGGRGG
GGGGQRWWDPAWRAEKLKQMQGEGPKEEVLDENEWWDRLEKLKVSPDQQEVVVKRNFGRS
GAEILEDFALRLGLHFHAYNKGRNTVLVVSRVPLPNYRADLDDRHGSSQRQISMSATTET
RVENMLANIRGAEPSSSSSPQISKGNAADKATLPRSSWGQATPQGQTLGVDKDKLNMELR
ENQRQLKASGPVKALEVFRKKLPAFQMKTELLEAVKNNQVVVVSGETGCGKTTQLPQFVL
EEEIENCRGSECNIICTQPRRISAMSVAARVAAERGDALGQSVGYQIRLEAKRSAETRLL
FCTTGVLLRRLVQEPDLNGVSHVMVDEIHERGMNEDFLLIILRDLLPRRPDLRLVLMSAT
INAELFSRYFGGAPMKHIPGFTYPVKELFLEDVLELTRFPVGSDQGGYNGGGGGRRRKTQ
EKVQDPVLEAFEGVNIESAYRNYSRGTQQSLQAWNGEQIDIGLVEAALQHICVKEEDGAI
LVFLTGWDEISKLVERLKGNSLFNDSRRFLILPLHGSMPTINQREIFQRPSVGVRKIVLA
TNIAETSITIDDVVYVIDCGKAKETSYDALNKLACLTPTWISKASAHQRRGRAGRVQPGV
CYHLYPKLVYDSMLRYQLPEILRTPLQELCLQIKSLQLGNIASFLSKALEPPEVLAVQNA
IDLLKTIGALSNAEDLTPLGCHLAKLPVDPKVGKMLLMGAVFQCLGPALTIAAGLAHRDP
FVLPLEHKEEADEARRYFAGDSRSDHVALLKAFEGWQEAKRAGRERNFCWENFLSSNTLQ
MMDDMRRQFQDLLSDIGFFDKSKGTQIYNQYSQDLEMVRAVLCAGLFPSVVQCKARGKRT
AFFTKEDGKVEPHPASVNSRVNSFPRPWLVYGEKVKTSAIYVRDSTNVSDYALLMFGGNL
TVSKNEQSVEMLGGYLQFQASKKTLQLVRELRSQLDMLLDRKVKNPQFDIHREGKPVVTA
VLELLQTNGNDDGGYGWGSGGNYSRR
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgttgtggcgcaagagctttgtgagctgcagagccaaaggccaactcctccatgtcgtc
gccgtttgcacttgtgacttgagagttgcgaagttgttgcagctcttcgctcaagttctc
gctcgccaccttctctgcccttcaatctctcttcgtgctgcgcctgatctctctcatcag
ctgctggtctgcacgagtagaggtgtgtggcacgcatcgacttggagttcgcgtagaaga
ggagtagtggtagcaatgccgggcggtcccaactcgcaagggcggggtaggggaggtaga
ggtggtggtcgcggaggcggaggtggtcgcggaggaggaggaggaggtggtcggggaggt
ggaggtggtggacagcgatggtgggatcctgcgtggagagctgagaagctgaagcagatg
caaggggagggtccaaaggaggaggttttggatgagaatgagtggtgggataggctggaa
aaattaaaagtttctccggaccagcaagaggtagtggtcaagcggaattttggtcgcagt
ggtgccgaaattctggaagattttgctctcaggcttggtcttcactttcacgcttacaat
aaagggagaaacacagtgttggttgtgagccgagtgcctttgccgaattatcgggccgat
ttggacgatcgtcatggttcctctcagcgtcagatttcaatgtctgctacgactgagact
cgggtggaaaacatgctggctaacattcgtggtgctgagccatcatcatcgtcttcaccc
caaatctcgaaaggaaatgcagcggataaggctactctgccccgatccagctggggacaa
gcaactcctcaaggtcagacattgggagtagataaggacaagttgaatatggagctgaga
gagaatcagcgacaactgaaggcaagtggaccagtgaaggcgttggaagtgtttcgaaag
aaattacctgcatttcagatgaagacggaactcttagaagctgtgaaaaataatcaggta
gttgtagtctctggagagacaggttgtggaaagaccacccaattaccacaattcgtgcta
gaggaggagatagagaattgccgaggttctgaatgcaatattatttgtacccaacctcgt
cgtatttctgctatgtcggtggctgcccgtgttgcagcggagaggggggatgctttgggc
caaagcgttggttaccagatccgtctggaagctaaacgatctgcagagactcgtcttttg
ttttgcaccactggtgtgctgcttcgacggcttgtccaagagcctgacttgaatggtgtg
agtcatgtcatggttgacgaaattcatgaacgcggcatgaatgaagatttcttattgatc
attttacgagatctgctacctcgtcgccctgacctgcgattggttttgatgagtgcgacc
attaacgcagaactattttctagatatttcggaggtgcaccgatgaagcacattcctggg
ttcacgtatccagtgaaagagctattcttggaggatgtgctagagcttactcgctttcct
gtaggttctgatcaaggaggttacaatggtggtggaggaggtagacgacgaaagacccag
gagaaggtgcaagatcctgtgcttgaagcttttgagggagtcaacatagagtcggcgtat
cgcaactacagtcgtggcacacagcaatcactacaagcctggaatggagaacaaattgat
attggattggtagaggcagcactgcaacatatctgcgtgaaagaggaggacggtgcaatc
cttgtgttcttgacagggtgggatgagatttcgaagctggtggagcgtctcaagggaaat
tccttatttaatgattctagacggtttctcatactgcctctgcatgggtccatgcccacc
atcaatcaacgagagatttttcagaggccctcagttggtgtccggaaaattgtgctggcc
accaacatagccgagactagtattacgatcgatgatgtagtctacgtgattgattgtggg
aaggcaaaggagacaagctatgacgcacttaacaaactggcgtgtttaacaccaacgtgg
atttcaaaagcctctgcacatcagagacgaggaagagctggacgagtccaacctggtgtt
tgctatcatttgtaccccaagttggtctatgattctatgctccgttatcaacttcccgag
atactgcggacgcccttacaagagttgtgtctccagataaagagcttacagctgggcaat
attgcgagtttcttgtcaaaggccttggagccacctgaagttcttgcggtacagaacgct
atagacctactgaagacaattggtgctctgagtaacgcggaagatttgactcccttgggt
tgtcatttggcaaaacttccagtggatcccaaggtgggtaagatgcttcttatgggtgca
gtcttccaatgtcttggacctgctctaaccattgcagcaggtcttgctcaccgggatccc
tttgtccttccccttgaacacaaggaagaagctgatgaggcccgacggtactttgcgggt
gattctcgaagtgaccatgtagcactgctgaaagcttttgaaggatggcaggaggcaaag
cgtgcaggaagagagcgtaatttttgttgggagaacttcttgtcctcaaatacactgcaa
atgatggacgacatgcgccgacaattccaggacttgctctctgacattggattcttcgat
aagtccaaaggcacccagatttacaatcagtacagtcaagatctggagatggtgagagca
gtcctttgtgctggtctgtttcccagcgtcgtccagtgcaaggcacgtggcaagcgaacc
gccttctttacaaaggaggatggcaaagtggaaccccatccagcctctgtgaattctcgg
gttaattcattcccacgcccatggcttgtttacggggagaaagtgaagacttctgcaatt
tatgtgcgagattccaccaacgtttccgactatgccttactcatgtttggggggaaccta
actgtcagcaagaatgagcaaagcgttgagatgctaggaggataccttcaatttcaagct
tctaaaaagacactccagttggttcgagaattgcggagtcaacttgatatgcttcttgac
cggaaggtgaaaaatccacagtttgacattcacagagaaggcaaaccagtagtaacggca
gtgctggagctgctgcaaactaatggcaatgacgatggtggctatggttggggttcaggt
ggtaattattctagaagataa
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