Physcomitrium patens (spreading earthmoss): 112291762
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Entry
112291762 CDS
T01041
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112291762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112291762
03041 Spliceosome [BR:
ppp03041
]
112291762
03009 Ribosome biogenesis [BR:
ppp03009
]
112291762
03016 Transfer RNA biogenesis [BR:
ppp03016
]
112291762
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112291762
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112291762
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112291762
Complex C
U4/U6.U5 tri-SnRNP related factors
112291762
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
Helicases
112291762
Transfer RNA biogenesis [BR:
ppp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112291762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112291762
NCBI-ProteinID:
XP_024395394
LinkDB
All DBs
Position
14:14955630..14963417
Genome browser
AA seq
1014 aa
AA seq
DB search
MATSKRKAEEDAERDDPAGKLARLPEPENDVEDDAAAAEDGEEEPAANGNGNRYVACLHE
VSYPEGYDHANGGERLAPAKPAKEYPFTLDPFQREAIRCLEAGESVLVSAHTSAGKTVVA
EYAIAMALRDKQRVVYTSPIKALSNQKYREMLEEFTDVGLMTGDVTISPNASCLVMTTEI
LRSMQYRGSEVNREVAWIIFDEVHYMRDRERGVVWEESIAMAPKNARFVFLSATVPNAKE
FADWVAKVHKQPCHIVYTDYRPTPLQHYIYPAGGDGLYMVVDEKAVFRDSSFQKAVNALS
SNAGGDGSKKNNGKTQKGGKGGVPAEPSDMFKIVKMIMQRQFDPVIVFSFSKRNCEENAN
QMAKLDLNDENEKKLVDGVFWNAMDNLSDDDKKLPQVSHLLPLLKRGIGVHHSGLLPILK
EVIEILFQEGLLKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRA
GRRGLDDRGICILMLDEKLEPAIAKDMIKGAADPLNSAFHLSYNMLLNQMRSEESNPEEL
LRRSFHQFQCDRALPKLQKRVKDMDEERQNIVIEEEDQVKDYRNLLEQLYSLRADIRSIA
FAPRYSLPYLQPGRLVQIARATNQDDLTVPVKKVTPVWGVIVNFEKVQTAAKESFDGESQ
GPSETKFKVDILANCKTVEDEGRTKLVQPVSLNETGEPAVVSLPLNQIEHLSVVRIFIPK
DLRPVEARERCLRTVIEVLRRFPEGPQLLDPEDDMEVKNDSYKKAVRRAEAVEALLEKHA
LADSPTLEPRLRALGQKEALTSKIRIARKDVRAATTLVFKDELKARRRVLRRLGYATAEE
VVELKGRVACEISSADELVLTELMFGGVFNDSTVEQIVALLSCLVWQEKLKSMAKLPEEL
AGIYAQLREVARRVGKVQVECKMAVDVEEYVNSFRPDIMELVYAWCKGAKFIDVMKLAQV
FEGSLIRALRRLEEVLQQLLLAARAIGELDLEAKFEEASTRIKRDIVFAASLYL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcgaagcggaaagcggaagaggatgctgagcgcgacgaccctgctgggaag
ctagcgcggctgccggagcctgaaaacgatgttgaggatgatgctgcagctgctgaagac
ggggaggaggagcctgcagccaacggcaatggaaatcgctatgtcgcgtgtttgcatgag
gtttcgtatcccgagggatatgatcatgcgaatggaggagagcgtctggctccggccaag
cctgcgaaggagtatccgttcacgcttgatccgttccagagagaggccattcggtgcctt
gaagccggagaatctgtcctggtatctgcacacacatctgctgggaaaacggttgttgcg
gagtatgctattgccatggcacttcgtgacaaacagagggtggtctatacctctcctatt
aaggctttgagtaatcagaagtatagagagatgttggaggaattcactgatgtaggcctt
atgactggagatgtgacgatttctccaaatgcttcttgcctggtgatgactacagaaatt
ttacgaagcatgcaatacagaggttcagaggtgaacagagaagtggcatggatcattttt
gatgaagttcactacatgcgagatcgggaaaggggtgttgtgtgggaagagagcattgca
atggcacccaagaatgcgcgctttgtgttcctatctgctactgtaccaaatgctaaggag
ttcgcagattgggtagcgaaggtacacaaacagccctgtcacattgtatacactgattac
cgacccactccacttcaacattatatttatccagctgggggtgatggcttatacatggtt
gtcgatgaaaaggctgtttttcgagattccagctttcagaaagctgtaaatgctctttcg
tctaatgctggaggtgatggttccaagaaaaacaatggaaagacacaaaaaggagggaag
ggtggagtacctgcagaaccaagtgatatgttcaagattgtcaagatgatcatgcagcga
caatttgatcctgttattgttttcagtttcagtaaacgcaattgtgaagagaacgctaat
cagatggccaagctagatctcaacgatgagaacgaaaagaagttggtggatggtgtattt
tggaatgctatggacaatttatcggatgatgacaaaaagcttcctcaggtttctcatcta
cttccattactgaagcgcggaattggtgtgcatcactctggcttacttccaattcttaaa
gaagttattgagattctatttcaagaaggtctcctcaagtgcttatttgcaacagaaaca
ttcagtataggcttgaacatgccagccaaaactgttgtatttaccaacgttcgtaagttt
gatggggacaaatttcgatggatttccagtggggaatacattcagatgagtggtcgtgct
ggacggcgtggactggatgatcggggtatatgcattctcatgcttgacgagaagcttgag
cccgccattgctaaagacatgatcaaaggggctgcagatcctttgaacagtgcgttccat
ttgagttacaacatgctgctcaatcagatgcggagtgaagaaagtaatccggaggagctc
ctccgacggtcttttcatcagtttcagtgtgatcgtgctttaccaaagcttcagaaacgg
gtgaaagacatggatgaggagcgtcaaaacatagtgattgaagaggaggatcaagttaaa
gactatcgcaatttattagagcaactctatagtttaagagcagacattcgaagcattgct
tttgctccccgttatagcttaccctacttacaaccaggtcgcttggttcaaatagcacga
gctacaaatcaagatgacctcacagttcctgtcaaaaaggttacccctgtatggggcgtt
atcgtcaacttcgaaaaagttcaaaccgcggccaaagagtcctttgatggagagagtcaa
ggtcctagtgaaactaagttcaaggtggatatactggcgaattgtaaaactgttgaggat
gaaggtcgaaccaagttagtgcaacctgtttctttgaatgaaacaggcgaacctgcggtt
gtttctctgccactgaatcagatcgagcacctaagcgttgtccgaatatttattccgaag
gacttgcgacctgttgaagctcgtgaaagatgtctgagaacagttattgaggtgttgcgg
cgcttcccagaagggccgcagttgctggatcctgaagatgatatggaggtaaaaaatgat
tcatacaaaaaagcagtacggagagcagaagcagttgaagctttgttagaaaagcacgca
ttggcagattcgccaacgttggaacccagattacgtgctttgggacaaaaagaagctttg
acatcaaaaatacgaatagcccgtaaggatgtccgtgcagcaactactttagtcttcaag
gatgaacttaaggcaaggcgtcgtgtgttgaggcgattgggatatgcaacagcggaagag
gtggtagagctgaagggcagggtggcatgtgaaattagcagcgctgatgagctcgtttta
acagagcttatgtttggtggagtcttcaacgatagcactgtggagcaaattgttgcatta
ctttcatgcttggtatggcaggaaaagctcaagtcaatggcaaagcttccagaggagctt
gcaggcatatatgctcaacttcgggaggttgcccggcgtgttggcaaagttcaagttgaa
tgcaagatggccgtagatgtcgaagagtacgtgaactcattcagaccggatataatggag
ctggtctacgcttggtgcaaaggcgccaagttcattgacgtcatgaagcttgctcaagtc
tttgaaggcagtctcattcgggcgctgagacgcttagaagaggtcctccaacaactccta
ctggctgctcgtgcaattggcgaacttgatctcgaggctaaatttgaggaagcatcaact
aggattaaaagagatattgtgttcgcggcctcattatatttgtaa
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