KEGG   Physcomitrium patens (spreading earthmoss): 112292071
Entry
112292071         CDS       T01041                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013  Nucleocytoplasmic transport
ppp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112292071
  09122 Translation
   03013 Nucleocytoplasmic transport
    112292071
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112292071
   03041 Spliceosome [BR:ppp03041]
    112292071
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     112292071
Spliceosome [BR:ppp03041]
 Complex C
  Other components
   EJC/TREX
    112292071
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112292071
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_HPS5 NBCH_WD40 DSE1_N Beta-prop_EIPR1 eIF2A WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_EML Tricorn_2nd TRM82_WD Beta-prop_NUP159_NUP214 PAC11 CFAP251_N B-prop_COPA_B_2nd WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_IFT80_2nd PROPPIN Beta-prop_WDR41 Beta-prop_ACSF4 ASA1 WD_LRWD1 DUF7099 Beta-prop_IFT140_2nd Beta-prop_WDR11_1st Beta-prop_VPS8 Beta-prop_Nup120_160 TP_0598_N WDR93 IceA2
Other DBs
NCBI-GeneID: 112292071
NCBI-ProteinID: XP_024395975
UniProt: A9TTX0
LinkDB
Position
15:5520004..5524406
AA seq 329 aa
MSTVEVVDVAPGPSAPVTGKALFQNLLTREFLGHKKKVHSVAWNCAGKKLASGSVDQTAR
IWHIEPHGHSKAKDMELKGHTDSVDQLCWDPKHADLLATASGDKTVRLWDARAGKCSQQV
ELSGENINITYKPDGSHIAVGNRDDELTIIDVRKFKAIHKRKFTYEVNEIAWNTTGELFF
LTTGNGTVEVLEYPSLQTLQTLVAHTAGCYCIAIDPTGRYLAVGSADALVSLWDVSEMLC
VRTFTKLEWPVRTISFNHDGQYIASASEDLFIDIAEVDTGRSVFQIPCRAAMNSVEWNPK
YNLLAFAADDKNKYQTDEGVFRVFGFEDP
NT seq 990 nt   +upstreamnt  +downstreamnt
atgtcgactgtggaggtggtggatgtggcgccgggaccctctgcccctgtcactgggaaa
gccttgtttcagaatttgcttacgcgggagtttctaggtcacaaaaagaaggtgcattcg
gtggcatggaattgtgctggcaaaaagttggcttcaggctccgtggaccagactgcacga
atctggcatattgagccacatggtcatagtaaggcgaaagatatggagttgaaggggcac
acggacagtgtcgatcagctgtgttgggatcccaagcatgcggatttgttggcaacggca
tcgggtgacaagactgtgcgtctctgggatgctcgcgcgggtaaatgctctcagcaagtt
gaattgagtggcgagaacatcaatattacctataaaccggatggcagtcatattgctgtc
ggcaatcgagatgacgagttgactatcattgatgttcgtaagtttaaggcaattcataaa
cgcaaattcacttatgaggtcaatgaaattgcgtggaatacaactggcgagctctttttc
ctcacaacagggaatgggaccgtggaggttcttgagtatccctcgttgcagactttacaa
acgctagttgcacatacagctggctgttactgcattgcaattgatcccactggaaggtac
ttagctgttgggagtgcggatgcgttggttagtctatgggatgtctctgaaatgctctgc
gtgcggacttttaccaagcttgagtggcctgttcgcacaatcagcttcaaccatgacgga
caatatattgcttccgccagtgaagatcttttcattgacattgctgaggtggatactgga
cggtcagtgttccaaataccttgccgggccgcaatgaacagtgttgaatggaatccgaag
tacaatttattggcatttgcagctgatgacaagaacaagtaccaaactgacgaaggcgtt
tttagagtttttggatttgaggacccgtaa

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