Physcomitrium patens (spreading earthmoss): 112292092
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Entry
112292092 CDS
T01041
Name
(RefSeq) small RNA degrading nuclease 5-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112292092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppp03009
]
112292092
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
RNases
112292092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-GeneID:
112292092
NCBI-ProteinID:
XP_024396016
UniProt:
A0A2K1L6X6
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All DBs
Position
1:complement(3802261..3805446)
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AA seq
643 aa
AA seq
DB search
MASEKAAMAVVGADEGRHESSTEQSSVKCNRRALKKKKQLLAIDNETKNDYFDVYGAQSK
AEVVLQPPAPNSRLKLKDLQGLVRWVLADGESPKWIFVKNMPLVTKVVMLHMPGLDAALY
MDHPGLFKSLNQCCGVPRAAVGFSPVANPAQTVEALFSCQKPQLKSKILGLKREHPYYSN
SDSEEDQVKDVKSSVGEVEDGLWKRRRLENESCGARFNSSSKDRTSFPASYYTLTARQMH
ENGYPKFALGEDIPPGFVRTLPAAANVTPLEMIAVDCEMCYTREGLELTRVSMVSSQGGV
ILDKLVKPVNPITDYNTQYSGITAAMMADVTATLKDVQDEILRSVHAETILVGHSVENDL
IALKILHSLVIDTALLYHHPTRGPMCKPALRMLTGRYLKRKIQGDKAGHDSVEDARAAMD
LALLKISKGPGFGKRMKPNCESLIEVLGRQDRRSSLIDRRPMLLQYAVGSCNAIIANSDD
EVCAKAVKEVKKTAVNFVWAQFSDLHAYYEEQARATQDWSARMAEMAAMMTCSTLSKSKS
LTDDRDTNPEAKAACRLLPEGLQTVLARLDDRFKKLYDALEPNTLLIVATGHGDTVSVRR
LQELKWKSFQNKEASSKWTRSNEDVLEEFAARAETMLAFTCIK
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgaaaaagccgctatggcggtggtaggagctgatgagggacgacatgagagc
tctacagagcaatcaagcgtgaaatgtaaccggcgcgcgctcaagaagaaaaagcagctt
ctcgctatagataatgagaccaagaatgattattttgatgtctatggtgctcaatcgaaa
gctgaagtggttcttcaacctccagcaccaaactctaggttaaaattgaaggatctgcaa
gggctagtgaggtgggtactagcagatggagagagtcccaagtggattttcgtgaaaaat
atgccgcttgtgacgaaggtggtcatgttacacatgccgggattggacgcggcgctctac
atggatcatcctggtcttttcaaaagccttaatcaatgttgtggggttcctcgagcagct
gttgggtttagtcctgtggcaaatccagcacagacagtggaggccctctttagttgccag
aagccacaattgaaaagtaaaattttaggtctgaagagggagcacccttactattcaaat
tcagatagtgaggaagatcaggtgaaggacgttaaatcttcagtcggggaagtagaggat
gggttatggaagcgaaggaggctggagaatgaaagctgtggtgcgagattcaactcaagc
agtaaggatcgaacgtcttttcctgcttcctattatactttgacggctcgacaaatgcac
gaaaacggatatcctaaatttgctttaggggaggacattccacccggtttcgtgagaact
cttcctgccgcagcgaacgtgacgcctttggagatgattgctgtggattgtgagatgtgt
tatacacgagaagggttggagctaacaagagtatcaatggtgagctcacaagggggtgtt
attttagataagctagtgaagcctgtgaatcctatcacggattataatacacaatacagt
ggaattacggcggccatgatggctgacgttaccgcaactttgaaagacgtgcaggatgag
atactgaggtcggtgcatgcagaaacgatattagttgggcattccgtggagaatgatttg
attgctctgaagattttacactctcttgtgatagatacggcattgctgtatcaccatccg
acaagggggcccatgtgtaagcctgctctcagaatgttgaccggaaggtacttgaaacga
aaaatccagggcgacaaagctggacatgacagtgtggaggatgcgcgtgcggccatggat
ttggctcttctgaagattagcaaaggtcctggatttggaaagaggatgaaaccgaattgt
gaaagcttgatcgaagtattgggacgccaagatcgtcgtagctcattgatagatagaagg
ccgatgttgcttcagtatgccgtcggttcttgtaatgcgattatcgcaaattcagatgat
gaggtttgtgctaaagctgtgaaagaagtcaagaaaactgcagtgaactttgtgtgggct
cagttttcggacttgcatgcttattatgaggagcaggcgcgagctactcaagattggtcg
gcccgtatggctgaaatggctgcgatgatgacctgcagtacactaagtaaatccaagagt
ctcactgatgacagagatacaaacccagaagcaaaggcagcttgtagattgttacctgaa
ggcttgcaaacagttttggcgaggttagatgatcgcttcaagaagttgtatgatgcattg
gaacccaataccttgctcatagtagcgactggccatggagatactgttagtgttcggcgg
ctgcaggagctcaagtggaagtcttttcaaaacaaggaagctagctcaaagtggactagg
agcaacgaagatgttttggaagaattcgctgctcgggcagagacaatgcttgcttttact
tgtatcaagtag
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