Physcomitrium patens (spreading earthmoss): 112292331
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Entry
112292331 CDS
T01041
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112292331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppp03036
]
112292331
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112292331
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112292331
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
112292331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
112292331
NCBI-ProteinID:
XP_024396443
UniProt:
A0A2K1JED0
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All DBs
Position
15:complement(15133795..15139021)
Genome browser
AA seq
1263 aa
AA seq
DB search
MGRGDSMSGVVVGSQEAQDDAALLSTLGVTAANPDDIERTLLAQVKEKARESQKNFVNLD
EEGEAEEQDDYGEDSHTVLRHRLQKQLVALDREIEAVADGAQAFQTTVDEAAAETSGIDR
DEEQMLEEKEDENSGGAVLRGAALHHALAKDRLKSLLKKKKDIRAQLRALSKQEQEDADV
IRTLVKDTSLVVNAKGKGKKKVDMEAAPSPNPVKKAVSFIEDDDFGAALDAASGLMETER
DRLIRTGMLTPFDKVKGFERKVHRVPKAESEDELRARQAAANLASSLAASAMFRPTSRLL
DASELPSQEPPMREFRRLRTPLKTVRPESEECQRQAKKKSDKRPKRPQVDKKWRKRPDES
DEDFVVDEEDESWSEGEEGRPKKRSRRSKAMPKQDPEDEASAEEEGLNEDDVVLDGGLRI
PAKIYNKLFDYQKTGVKWLWELHCQKAGGIIGDEMGLGKTIQVLVFLAGLHNSGMYTPSI
VVCPVTLLRQWKREAKKWYPAFNVEILHDSAVASQKSSNKKKRKPKRGSDEEFDEEESDY
SENEQEKPVKVKKDRWDGMIDRVVDSSDGIILTTYEQLRIVRDKLLDINWGYAILDEGHR
IRNPDAGTTLICKQLQTVHRIIMTGAPIQNRLTELWSLFDFVFPGKLGVLPVFQAQFSLP
IAIGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKSDVDAHLPKKTEHVLFCSLTKDQ
RSAYRAFLASSEVEQIFDGNRNSLFGIDILRKICNHPDLLEREHSAGHPDYGNIERSGKL
KVLAQVLELWKTQGHRVLLFTQTQQMLDIVENYVTSKGYVYRRMDGNTPVKQRMQLIDEF
NEGDHVFIFILTTKVGGLGTNLIGANRVVIFDPDWNPSTDMQARERAWRIGQKKEVVIYR
LITRGTIEEKVYHRQIYKHFLTNKILRDPQQRRFFKARDMRDLFTLQEENAATETSTLFA
EVGGSIQLEDEESENVGKDVQDSGSNRRQRGTKKDSQEEALNKHRPEQDNSHNSEDGEPQ
EEESRILKNLFDANGIHSAMDHDAILGIHESERVMIDHEASRVAERAALALQQSRRLRSA
DNVSVPTWTGRSGVAGAPATVRQRFGSTANARLVASSSQGQTRSEESGNQPAIGISAGSS
AGRAFTSADLLARVRERKLDTPGTSGSVPNASPSTRPTTSRPPSGPGRNGEIPVQPEVLI
RQLCTFIQREGGSVASSHVVNQFRDRISSRDVPLFRQLLKQIAVLQKGSLESKWVLKPEY
QER
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaggcgattcgatgtctggagtggtggtgggttctcaggaagcgcaagatgat
gcggcgcttctgtccactttgggcgtcactgctgccaatcccgatgacatcgagcgcacg
ttgctagcccaggtgaaggaaaaggctcgtgagagccagaaaaatttcgtgaatctcgat
gaagagggggaagcagaggaacaggatgactatggcgaagattcccatacagttctccga
caccgcttgcagaagcagttggtggcattggatcgggagattgaggctgttgccgatgga
gcacaggcctttcaaaccacagtggatgaggcagcagccgagacctccggaattgataga
gatgaggagcagatgttggaagagaaggaagatgaaaattctggtggtgccgtcctaaga
ggcgccgctctgcaccatgctctagctaaggatcggctgaagagtttgctgaagaagaaa
aaagatattagagcccagcttagagctttgagcaaacaggaacaggaggatgcagatgtc
atacgaaccctcgttaaagacacatctctggttgtgaatgcgaaaggaaaggggaagaag
aaagtggatatggaggcggctccatcaccgaaccctgtgaagaaggcggtttccttcatt
gaggacgatgactttggtgcggcgttggatgctgcatcaggattgatggaaactgaacgt
gacaggctgatccgcacaggtatgctcacaccattcgataaggtgaaaggttttgagcgc
aaggtccacagagttccgaaggctgaaagtgaagatgagcttcgcgctagacaagctgcc
gctaacttggcgtcatccctggctgcctctgctatgttcaggcctacgagcagattgcta
gatgcttctgaacttccaagtcaggagcctccaatgcgagaatttcgacggttgcgaaca
cctttgaaaacagtccgtccagaatctgaggaatgtcaacgtcaagctaaaaagaaaagc
gacaagagaccgaagcggccacaagttgataagaagtggagaaagaggcccgacgagagt
gacgaagatttcgtggtggatgaagaggatgagagctggagtgaaggtgaagaaggtcgt
ccaaaaaaacgctccaggcgaagcaaagctatgccgaagcaagaccctgaggatgaagcc
tcagctgaagaggagggcctaaatgaagacgatgtggtactcgatggtgggctgaggata
cctgctaaaatttataataagctcttcgactatcaaaagactggagtgaaatggctgtgg
gagctgcattgccaaaaagcaggaggtattatcggggatgaaatgggcttgggaaaaact
attcaagtcttggtatttctagcaggtttacataatagtggaatgtatacccctagcatt
gtcgtttgtcctgtgacgctcctccgccagtggaagcgagaagcaaagaagtggtatcct
gctttcaacgttgagattctccacgattccgctgttgcatcgcagaaaagcagcaataag
aagaaacgcaagcctaagcgaggttctgacgaggagtttgatgaggaagaatctgattac
agcgaaaacgaacaggagaagcctgtgaaagtgaagaaggataggtgggatggtatgatc
gacagggtggtcgattcttcagatggcattattctgacgacatatgaacaactgcgcatc
gtcagggataagttattggacatcaattggggctatgccatcctggatgaggggcatcgc
ataagaaatcctgatgcagggaccactttgatatgcaagcagttgcaaacagttcatcga
atcatcatgacgggcgctcctatacagaatagacttacggaattgtggtctctctttgac
tttgtgtttccggggaagcttggggttttgccagtattccaggcccagttctcgttacct
atagcaattggtggctattccaatgccactccacttcaggtgtcaactgcttatcgatgt
gctgttgttcttcgtgatttgataatgccatatttactgcggcggatgaagtcagatgtt
gatgctcatcttccaaagaagactgagcatgttttgttctgtagtttaacaaaggaccag
cggtcagcctatcgtgcatttcttgccagttctgaggtggagcagatatttgatggcaat
cggaattctctttttggaatcgatatcttgaggaagatttgtaatcaccccgatctcttg
gagagggaacacagtgccgggcatcctgattatggaaacattgagcgcagtggaaagctg
aaagtacttgcgcaagtcttggagttatggaaaactcaaggccatagagtgcttctcttt
acgcaaacacagcaaatgctggatattgtcgagaactacgttacttcgaaggggtacgta
tatcgtagaatggacgggaataccccagtcaagcagcgaatgcaattgatagatgagttc
aatgaaggtgatcatgtatttatctttatactgaccaccaaggtgggaggccttggaaca
aacttaattggagccaatcgtgtggttatctttgatcccgattggaacccttcgacagat
atgcaggcccgggaacgcgcttggcgtataggacaaaagaaggaagtagttatttaccgg
ctgattactcgggggactattgaagagaaagtctaccaccggcagatttacaagcatttt
ctaacgaataagattctccgtgacccacaacagcgccgcttttttaaggcgagggacatg
cgagatctcttcacactgcaagaagagaatgctgcaacagaaacttctactctctttgca
gaagttggtggtagcatccagctggaggatgaagagagtgagaacgtgggcaaagatgtg
caagactcaggaagtaatagaaggcagagagggacgaaaaaggactcacaagaggaggcg
ttgaataagcacagaccggaacaggataacagtcataactcagaagatggagaaccacaa
gaagaggagtcgagaatattgaaaaacctttttgatgcgaatggcattcattcagctatg
gatcatgatgcaatacttggaatacacgaatctgagagggtcatgattgatcacgaagca
agccgagttgctgagcgagcagcgcttgcattacagcaatcacggaggttgcgtagtgcg
gacaatgtttccgtgcctacatggactggccgttcaggggtcgctggtgctcctgccact
gtgcgacaaaggtttggttctactgcgaatgcacgcttggttgcatcttcatcacaaggt
caaacaagatccgaggaaagtggtaatcagcctgcaattgggatttctgcgggttcttct
gctggcagggctttcacctctgctgacctacttgccagagttcgagaaagaaaactcgat
actccaggtacaagtgggagcgtacccaatgcaagtcctagtactagacctactacaagt
agaccaccttctggtccaggaagaaatggagaaataccagtacaaccagaagttcttatt
cgacagttgtgcacttttattcaaagggaaggtgggagtgtggcatcttcccacgtcgtt
aaccagtttagagaccgtatttcgagtcgtgatgtgcccctgtttcggcagcttttaaaa
cagatagcagttctgcagaaaggatcgctggagtcaaagtgggttttgaaaccagaatac
caagaacgttga
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