Physcomitrium patens (spreading earthmoss): 112292409
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Entry
112292409 CDS
T01041
Name
(RefSeq) uncharacterized protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112292409
09122 Translation
03013 Nucleocytoplasmic transport
112292409
03015 mRNA surveillance pathway
112292409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112292409
03041 Spliceosome [BR:
ppp03041
]
112292409
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112292409
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112292409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
112292409
NCBI-ProteinID:
XP_024396615
UniProt:
A9TNC4
LinkDB
All DBs
Position
15:complement(14344376..14348931)
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AA seq
697 aa
AA seq
DB search
MVTPSAALGNRTPEQLKVTELRDELRKRGIQAKGLKKELVDRLEEVLRQEELQQHEALDA
VAAAAAVDAEQPVPATPVNKTRSEGHVDDDIQERNDGAASEPFNAGGVDHNEPAETQENT
IPASQPLAEEFTESKPLPDALVETQERDPVIPSIALHEEAEKPDAATQNVTDKADQVVTA
SIPDQPVPAKETLPEDPALEVAEVEAEPANVVYPVEKENVTAGLKDLNESKEEPQEVREE
KFETTKESTLSERSTAVVQAVEVDVDEVMGGTEEVFTTAVEKTVTTTVEEQVVSVAPEDR
NNTIVLEEQVITMSTTIATGDESAVEIVEEKVTTFEKVEGIVTLVADDEGVKPDTEVSRS
LEDKSADIIGEAPMEDAIKVAEEATVVENSKDGAPMDVDADADAVKVSKRKQTDGENNAL
DATKRRRWNSAKGDNNVSGKETQPLEVQEAAPPSNAPVPSAAALTPKSIPSEKVAITRAP
PTRTETSGNGDNRKTRVVPPSAKPATTSLKIDKFLRPFTFKAVKELLAQTGTVEDVWMDQ
IKTHCYVTYSSVEEATATRNALYNLQWPPQGGRLLTAEFVDPSEVKVRSDGEKAAAAAAS
TPTSAAPPVNAITPRGGTSANSKASADGPASLPQPSLPLPSREKPKQEVERTPTLDDLFR
KTRAKPHIYYLPLTAKEVTDKVAIKNREAASKPTAKT
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggtgacgccttcggcggcattgggcaatcgcacgccggagcagttgaaggttacggaa
ttgcgtgacgaacttcggaagcgtggcatccaggccaagggcttgaagaaggagttggtg
gatcggcttgaagaagtactaaggcaggaggaattgcagcagcatgaagcacttgatgct
gtcgctgctgcagctgctgtggatgctgagcaacctgttcctgcaactccagttaataaa
acacgttcagagggtcatgttgatgatgacattcaagagcgcaatgatggtgcggcttct
gaaccttttaacgctggaggagtggatcacaatgaacctgcggaaactcaagaaaacaca
attccggcttctcaacctctggcagaagagtttacggaatctaagccactgccagatgca
ttagtagaaacccaagaaagagatcctgtaatcccaagcattgcacttcatgaggaagct
gaaaaaccagatgctgcgactcaaaatgtgactgacaaggctgaccaagttgtcactgca
tcgattccggaccaacctgtgcctgcgaaagagaccttacccgaggatcctgcgttagag
gtcgcggaggttgaagctgagcccgctaatgttgtatatccagtagagaaagaaaacgtc
actgctggtttgaaagatttgaacgaaagcaaggaagagcctcaggaagtaagagaagag
aagtttgagacaacgaaggaatcaacactgtctgaaaggtctacggctgtagtgcaagcc
gtggaagtagatgtggatgaagtcatgggagggacagaggaagtcttcactactgcagtt
gaaaagactgtgacaacgactgtggaggaacaggttgtttcagttgcgcctgaggaccga
aacaatacaattgtactagaggagcaagtcattacaatgagcaccacaattgctaccgga
gatgaatcggcagttgagatcgtggaagaaaaagttactacttttgagaaggttgaggga
attgttaccttggttgccgatgatgaaggtgtgaagcctgatacggaggtctccaggtcg
ttggaggacaagagtgccgatattatcggcgaggcgccgatggaggatgccataaaagtg
gctgaggaagcgacggtcgtagagaattcaaaagatggggcacctatggatgtcgatgcg
gatgccgatgccgtcaaagtgtcgaaaagaaagcagactgatggggagaataatgctttg
gatgccaccaagcgacgacgatggaattcagcaaaaggggacaacaatgtctcaggaaag
gagacgcaacctctcgaggtgcaggaagcggcccctccttcaaatgctcctgttccatct
gctgcagctcttactccgaagagcatcccttcggagaaagtggccatcactagagctccc
ccaactagaacagagacctcagggaacggtgataatcggaaaacccgtgttgtaccacct
agtgccaagcccgccacaacgtccttgaagattgacaagttcttacgacctttcactttc
aaggccgtcaaggagcttctggcgcaaacaggcaccgtggaagatgtttggatggaccag
atcaaaacccactgctatgtcacgtattcatctgttgaggaggccacagcgactcgcaat
gcattgtacaatcttcagtggcctcctcagggagggcgactgttaacagctgaatttgtc
gatccatctgaggtgaaggtacgaagcgatggtgagaaagcagctgcagctgcagcctct
accccaacttcagcagcccctcccgtaaatgctattactcctagaggaggaacgtcggct
aattcaaaggcatcggcagatggaccagcttcgcttccacaaccatctcttccattgcct
tccagggaaaagcctaagcaagaggtggagagaactcctaccctggatgatcttttcagg
aaaacaagagcgaagccacatatttattaccttcctttgaccgctaaagaggttacggac
aaagtagctatcaagaatcgagaagctgcctcaaagcctactgctaagacttag
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