Physcomitrium patens (spreading earthmoss): 112292661
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Entry
112292661 CDS
T01041
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112292661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112292661
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112292661
Spliceosome [BR:
ppp03041
]
Complex C
Other components
Step II factors
112292661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
AAA_30
AAA_16
SLFN-g3_helicase
T2SSE
PhoH
ABC_tran
DAP3
TsaE
Helicase_RecD
NACHT
Sigma54_activat
SRP54
AAA_25
AAA_24
ATPase_2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
112292661
NCBI-ProteinID:
XP_024397142
LinkDB
All DBs
Position
15:827652..832258
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AA seq
703 aa
AA seq
DB search
MEGRKLLPINQYEEQIVDAVAKHSVVVVIGETGSGKTTQLSQILHRAGYTKKGMIGVTQP
RRVAAVSVARRVAWEMDVQLGDEVGYSIRFEDRTSKNTLIKYLTDGCLLRECLFDYEFKQ
YSVIILDEAHERSLNTDILLGLLKRIAQNRDTELKVIITSATLDGQKFSEYFHGCPVVNV
PGKLYPVQLLYSTEVPSSYLESAVETAIDVHVREPEGDILVFLTGQDEIEKVLKMLEERV
LMLEEGSCLDAIILPLHASLAPEVQARVFQPAPPNCRRIIVATNVAETSLTVDGVVYVID
PGFVKQRNYNPNTGMDSLSVVRISRVQATQRAGRAGRTRPGKCYRLYPMSAFEEEFLPAT
VPEIQRSSLTGAVLHLKFLDLPNVDILHFDFIDPPLRESLEDALRQLFAIDAIGPDGKIT
ALGKRIAELPLEPALGRTLLAAEDLGCLSQALTVAAMLSAETIFMQGPKKGEDRKRSRED
QQLPNGNNYGDHVQYLQIYELWKKNNFDIKWCRSNNLNIRSMLFAKDVRRQLALITSRKK
FEDDEAMQKIKSARSLRKALCQGYACRLAQRMPKHNGYHTVGNKSQLVQLHPATSPLQVD
EDGLYPEWILYHELMASSRAFLRHVCVVEKEWVVPILEKLQNINIRSLSGLSGHESQKEK
ISEGEKKAIASNPIDQEARSVDVNAARARFLARKQSKSIKSSK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaggggcgcaagctgttgccgataaaccagtatgaggagcagattgtggatgctgtg
gccaagcacagtgttgtggtggtcattggagagacgggttcgggtaaaaccacccaactt
tcgcagattctgcaccgagcagggtacacgaagaaaggcatgattggtgttactcagcct
cggcgagtggctgctgtttctgttgcacgtcgtgtggcttgggaaatggatgttcagcta
ggggacgaagtgggatattctattcgatttgaagaccgaacatccaaaaatacactcata
aagtacttgacggatggttgcttgcttcgtgaatgcttgtttgattacgagttcaaacag
tactctgtcatcattcttgacgaggctcacgagcgcagtttgaatacagacatattgctt
ggcctgttgaagcgtattgctcagaatcgggatactgaattgaaagtgatcattacatct
gccactcttgacgggcagaaattttccgagtattttcacggatgtcctgttgtcaacgtt
cctggcaaattatatcctgtgcaactcctttacagcacagaggtgcctagcagctacttg
gagtctgctgtagagacagcaatcgatgtacatgtcagagaacctgaaggggacatttta
gtttttctcactggacaggatgagatagagaaggttctcaagatgctggaagagagggtt
ctcatgctggaggagggttcctgtcttgacgccataatacttccactacatgcatcttta
gcgccagaggtccaggctcgtgtatttcaaccggcccctcccaattgccggcgcattatt
gtggcgaccaacgttgcagaaacgtctcttactgtggacggtgttgtgtatgtgattgat
cctggatttgtgaagcaacggaactataatcccaacactggcatggactcactttctgtt
gtacgcataagtagggtgcaggccactcaaagggcaggtagagcagggcggacgcgtcca
ggcaagtgttaccgcctttatccgatgtctgcatttgaagaggagtttcttccagccact
gttccagaaattcaacgatcatctctcacgggcgctgtattacatctcaaatttctggat
ctgccaaatgtggatatcctgcacttcgactttatcgatccaccattgagagagtcactg
gaagatgctctacgccagctgttcgcgattgatgctatcggtccagatggtaagattact
gccctcggaaagcgtattgcagagctgccattggaacctgctctaggaaggactttattg
gctgctgaggaccttggttgtctttcccaagccctgactgtggctgccatgctttccgct
gaaacaatcttcatgcaaggaccgaagaaaggtgaagatagaaagaggtctagagaggat
cagcagctgccaaatggaaataattacggggatcatgtgcagtacttgcaaatttatgag
ttgtggaagaaaaataattttgatatcaaatggtgtagaagcaacaatttgaatatcaga
tctatgctcttcgccaaggatgtgagacgtcaactagcacttatcacgtcaaggaaaaaa
tttgaggatgatgaggccatgcaaaagatcaagagtgcacgttcactgcggaaagcttta
tgtcaagggtacgcttgtagattggcgcaacgaatgcccaaacataatgggtatcatact
gttggcaacaaatctcagctggttcagctccatccggcaactagtccgctccaggtggat
gaagatggtctgtatcctgagtggatcctgtaccacgagcttatggccagctcgcgcgct
ttccttcgtcatgtttgtgttgttgagaaagagtgggtggtccctattttggaaaagcta
cagaacattaatattcggagtctcagtggactgagtggtcatgagtcccaaaaggagaaa
atctcagaaggagagaagaaagctattgcatcgaatcccattgatcaggaagcacggtct
gtagatgtcaatgctgcacgcgccagatttcttgcaagaaagcagtctaagtccatcaag
tcttccaaatga
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