Physcomitrium patens (spreading earthmoss): 112292821
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Entry
112292821 CDS
T01041
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112292821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112292821
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112292821
mRNA degradation factors
5'-3' decay
Decapping complex
112292821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_Vps41
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
DUF445
Motif
Other DBs
NCBI-GeneID:
112292821
NCBI-ProteinID:
XP_024397428
UniProt:
A0A7I4AYQ0
LinkDB
All DBs
Position
15:1976817..1985789
Genome browser
AA seq
1544 aa
AA seq
DB search
MGATGPSGGFDIHNFFNNPPPSPYPPPQYSSHPPYPAAQFPQNSGPFPTNSGSFPSMPPQ
NFQYSSSQQQQEQTQVFHPYMHYQQEHGQRPSSYTTAPYNQHQQQQQVQFPPPGALNSLH
GNPPLSSLPLSSLSQGSGGPNQAPSSPLDGARLMALLTTHGGAEAPSSDDGSLVSGVQQS
GGERPRSTQDGSQDVSIPPPALAPALPTAPPAPAAQMTPTASGRASSGKQPRGRHLWGDH
VVYDVDVRKPGEAQPQLEVSPITVYGSDPQLVVGRQIAVNKKYICYGLRQGTIRILNINT
ALRALLRGHTQRVTDMAFLSEDQHLLASASVDGRIYVRRILEGQSAEGSKVLITEQILLA
IQFVGGWESCHPRVCWNLQTEDVLEVAIGPYVLSIDVGKVQQAAPPGGFLVDQPLQCQVE
NPVEGVCVVGGHDGTVTDLAVPSFSTSRVASASQDGTVRIWGDTSGIPLLSIMPHGGDAV
CAVAFLSAPRRPDHHVLLTAGPLNRELKLWAPSSGPEESPSKVGTGTGAWRCIQTLEFQS
SDVADGYYEDTIFNQLVVASRASLILLANAKKNAIYAVHVEFGHNPAAARMNYLAEFSVK
MPILSLTVAEDSVTEAGEGKVQIYCVQTQAIQQYGLDVSQCLPPVEGSMTETPGTPERSV
LPGAQDSGRSDQTGVPDLIDMGPASGVSTGASSTPNVSVPARNPAVSSAFGSPVEVGRLE
VPSAHHVEKSIAVDFNALLQSSTKAQNKESGKASSGFSSSAELRTQMSGKAESTPAGNTK
PPTSRRSRSRSPTRAPDSHHVSMGSKQKGEDIQEMRPEAPPLMPPLDVSNLDRAQSNSSS
TSAEEVLDRVQEKGALADSASVKSSNSSQQGGQHQGLHLITPSELMNLAAGSKHGEAYGA
PLSVPGQEQSSRDGKAPLSKGSGSTDGFIGMDSNVDMEKEVVESKVSVVEDDISGKEVLV
SSLLESLETTQMMGNDYVDKEPSVPQDSMDRYAGENSQVEEGEVSEDKERPLIGTEDVND
RLRDLSFRDGGGEAALPPPQAAIAKGRKNKNKTSAGGIGSSSVLSSQMPSMMASGLKPVG
EASHGMNPVPASTPTSAVAPAPTPIDPAFLAQVASMQESLNQLVSMQKEIQKQMTVMVAV
PVAKEGKRMEGALGQRMEKVLKAHVDAMWARLAEENARREKQERERVQQVTTMLTNFVSK
DMPVALERGVKKEFAAIGPVVAQAVLPPLHKAVSTTVAESFQGFTEKMLPQLEKSVGAKL
EGTVTRQIQTQFQTIGRQVLQEALRSCFESTVLPAFERTCRTMLDHVESSFQHGMSEYTQ
HAQEQLLSSHSDLASTLKDTVASATVLADSLKGELAEGQKKLMALAESASANAARALPAN
NQINGGLPDKVRIHVLSLQHLEESLDPTIELSRLLKENKLEEAFNKALSLSDVAVVSWLC
MQLDEDHLFRKVPLPLSQGVLLSLVQQLGCDLGKDTDRKLSWIREAALALNPEDPLLAPH
MRPFLQQLYQSLHRQLSLSSVPGEQVNLRLVMHVVHSLLTSCKQ
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccacaggaccgtcgggaggtttcgacatccataatttcttcaacaatccacct
ccgagcccatatcctcctccccagtactcatctcaccctccttatcccgctgctcaattc
cctcagaattcaggaccttttcccaccaactcgggctcttttcccagcatgcctcctcag
aattttcagtacagttcgtcacaacagcagcaggagcagactcaagtattccatccttac
atgcactatcagcaggagcatggacagcggccgtcaagctataccaccgcgccctacaac
cagcatcagcagcagcaacaggttcagtttccccctccgggtgctctgaactccctccat
gggaaccctcctctttcatctcttcctttgtcttctttgtctcaaggcagtggcggccca
aaccaggcaccatcctctcctttggatggcgcccgccttatggctcttttgacaacacat
ggcggagctgaggctcctagcagcgacgacggttccctggtgtcaggggtccagcaaagc
ggcggtgaacgacctcgatcgactcaggatggtagccaggatgtttctatccctccacct
gcgctggctccggcattgcccacagcacctcccgccccagctgctcaaatgactcccacc
gcgtctggtagagcgtcgagcggcaagcaaccacgcggtcggcatttgtggggagatcac
gtcgtgtacgacgtggatgttcgtaaacccggagaggcgcagccccagttggaagtgagt
cctattacagtttatggatccgatccacagctggtggtcggacggcaaattgcggtgaac
aaaaagtacatatgttatggattgcggcaagggacgattcgcatcctgaacatcaacacg
gcattgagagcgctacttcgaggccatacgcagagagtgacggacatggcgtttttgtcg
gaagatcagcaccttcttgcaagcgcaagtgtggacggtcgcatttatgtgcgacggatt
ttggagggacaatccgccgagggcagcaaggtactcatcacagagcagatattgctagcc
atccaattcgtcgggggctgggaatcgtgccatccgcgcgtatgctggaatctgcaaacg
gaggatgtgttggaggtggcgatcgggccgtatgtcctgagcatagatgttgggaaggtg
cagcaggctgcacctccaggggggtttttggtggaccaacctctccaatgtcaggtggag
aatccagtggaaggagtatgtgtggtgggtggtcacgatgggactgtgacggatttggca
gtgccatcgttttctacctccagggtggcatcggcctcacaagatggcacggtgcgcata
tggggggacaccagcggcatcccattgctgagtatcatgccccatggtggagatgcagtg
tgtgcagtggcctttttgtcagcaccacggcgtcctgaccatcatgttttgctcactgcg
ggaccattgaatagagagttgaaactgtgggcaccctcgagtggtccggaggagtcaccg
tcaaaggtaggtacaggtacaggagcgtggcgctgcatacagacgctggagtttcagagc
tcggatgttgctgatgggtattatgaggatacgatttttaaccagttggtcgtagcctcc
cgtgctagcctgattttgctggcaaatgcgaagaagaacgccatatatgcggtccacgtg
gaatttgggcacaacccagcggctgcacgaatgaactacctggcggagttttctgtgaaa
atgccgattctgagcttgacagttgccgaagacagcgtgacggaggctggagaaggcaag
gttcagatctactgtgtccagacacaggccattcaacagtatggtctggacgtgtcacag
tgtttgccgcccgtggagggcagcatgacggaaactccaggaactcccgaacgctcagtt
ttgcctggtgcacaggattctgggcgatccgatcaaaccggcgtccccgacttgatagac
atgggacctgcatccggtgtgagcacgggggcgtccagtacacccaacgtgagcgttcct
gcaaggaacccagctgtgtcttccgctttcggaagtccagtggaagttggtcggttggag
gtgccatccgcacatcacgtggagaagagtatagcagtagacttcaatgcgttgttgcaa
agttccacaaaggcgcagaataaggaaagcgggaaagctagttcggggttctcatcaagc
gcagagctccggacgcaaatgtccggcaaagccgagtcgacacctgcaggcaatacaaag
cctcccacttctaggcgatcgcgatcaaggagtccaaccagggctcccgattcgcaccac
gtctcgatggggtctaagcagaagggagaggatattcaggagatgagaccagaggcacca
cctttgatgccaccccttgatgtgtcgaatctggacagggcgcagtccaattcaagcagc
acttctgcagaggaggttttggacagagtacaggagaagggcgctcttgcagacagcgcc
agtgtgaagtcttccaattcatcgcagcaaggaggtcagcatcaaggtcttcatttgata
actccttcggagttgatgaacttggcagccgggtctaagcatggtgaagcctacggtgcg
cctctttcagttcccgggcaagaacaaagtagtagggatggaaaggcaccgctatccaag
ggtagtggcagtaccgacgggtttattggcatggactccaacgtggacatggagaaggag
gtagtggagtcgaaagtctcggtcgttgaggatgacatcagtggaaaggaggttctggtg
tcttccttattggagtctctagagacaactcaaatgatggggaatgattacgtggacaag
gagccctcagtgccccaggatagcatggatcgatatgcaggagagaactcgcaggtggaa
gagggcgaggtttcagaagataaggagagacccttgattggtacggaggacgtgaacgac
aggctgagggacctgagtttcagggatggtggcggcgaggcggctctaccccctcctcag
gcagcaattgcaaaggggagaaagaacaaaaataagacgagcgcgggtgggattgggtct
agctccgtattatcctcacagatgccaagcatgatggcgtctggattaaagccagtaggc
gaagccagccatggcatgaatccggttccagcgtcgacgccgacatcagcagtagcacct
gctcccactcccatcgaccctgcttttcttgctcaggtggcttcaatgcaagagtcgctg
aaccagttggtgagcatgcagaaggagatccagaagcagatgactgtgatggtggctgtg
cctgttgcgaaggagggcaaacggatggaaggggcgttagggcagcggatggagaaggtg
ttgaaagcacatgtggatgccatgtgggcacggttggcggaggagaatgcgcggagggag
aagcaggagcgcgagagagtgcagcaggtgacgacgatgctcacgaattttgtgagcaaa
gacatgccggtcgctttggagcgcggagtcaagaaggaattcgccgcgatcggtccagtt
gtggcgcaggcggttctccctccccttcacaaagcggtttcgacaaccgtggccgagtcg
tttcagggttttacagagaaaatgttgccccagctggagaaatcggtgggcgcgaagctg
gaggggacagtgacgcggcagatacagacccagtttcaaacgattggtcgacaagttttg
caggaggcattgcgtagttgctttgaaagcacagtacttccggctttcgagcggacatgc
agaaccatgctcgaccatgtggagtcgtcgttccagcatggcatgtcggagtatactcag
catgctcaggagcaacttctgtcgtctcactctgatcttgcttccacgttgaaggacacc
gtggcatcggcaaccgtgcttgcggactcgttgaagggcgaattagcagagggtcagaag
aaacttatggcacttgcagagagcgcgagtgcaaatgcagctcgcgctctgcctgctaac
aaccagatcaatggcggccttcctgacaaggtccgcatccatgtgctttcgttgcagcat
ctggaggagtcgctggatcctacaatcgagctttcaagacttttgaaggagaacaagctc
gaagaggcgttcaacaaggctctgtctttgagcgacgtagcagtcgtgtcgtggctttgc
atgcagttggacgaggatcatcttttcagaaaagtgccactacctctgagtcaaggagtg
ctgctgtcgttagtacagcagctgggctgcgatctgggcaaagatacagaccggaagtta
tcttggatccgggaggcggcactggcactgaacccggaggacccgttgttggctccacac
atgcgaccctttttacaacagctgtaccagagcttgcaccggcaattgtcgctgagttcg
gttccaggagagcaggtgaatttgagacttgtcatgcacgtggttcactcgttgttaaca
tcttgcaagcaatga
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integrated database retrieval system
