Physcomitrium patens (spreading earthmoss): 112292896
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Entry
112292896 CDS
T01041
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020
RNA polymerase
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112292896
09124 Replication and repair
03420 Nucleotide excision repair
112292896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112292896
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112292896
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112292896
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112292896
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112292896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112292896
NCBI-ProteinID:
XP_024397633
UniProt:
A0A2K1JDE5
LinkDB
All DBs
Position
15:complement(10910292..10916070)
Genome browser
AA seq
1240 aa
AA seq
DB search
MMDSRNCPPPAFARPIYPEDFNNPLEVVQDSTTTQAYFQATESTRHFYPTRSPRRSPGRS
PHRSEGRLSRSEEEVARSAVAKIIFKGRSLVEHHLRSFNEFMEYGLPAMFEEAGSFDCIP
DHSVLVDSGIGVRKWARIVYGEVAVGKPYTTFTREGVKEVVDLLPHEARLRNLSYSAHLY
VNMTLEVYENRGNKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHGLSEKDSVAKGHC
SFDDGGFFIIKGSEKVLIAQEEKAHQSIYVSYLKRTDTWIATYSPTWRGFNSNQMNRGKT
FVKLRMRKKAELLVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFHDLLLSS
IWDADLILEEFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGKTIIGQL
FVHTEGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTGQLLSHQFRKAMAH
LERDVKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTNEGLKSSGVVAVLK
RMNPMATLSHLRQFRLNLPPPMKPTDPARHPNYSYWGRICPTQTSDGAECGLIKSLALTC
VVSSDTPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFVNGRWVGIFYDYNATLAIVATL
RQLRREQLLHGEIEVARDPKTKAVHIHTDAGRLLRPLLIVKEQKLAMSKQHLKTLRAMSK
QESAEACWNFLLEQQVVELLGTEEEEGALIALNRDDLERARKDPDAPLYTHSEIDVSYIF
GLGASVIPFLDHNQASRNLYQAEKHCKQAMGFYTSNLSGRSDCSGHQLFYPQKPLVTTRT
WDYLKKPEITNGQVAIVSIQCCGYNQEDSIIMNRASIDRGLFRSMHFKTYRGEERHNVIE
HFAKPSISIAKRSRNASLNKIDEDGFPHLGDYLEKGDIIIGKLTAEMGNPKLADSSQRLR
AHENGRVDQVLLSSEEDGHRIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFT
RQGVVPDIIINPHALPNRQTVGQLLESLLGKLMAVRGTQQSVAPFQKQSATRKFMDQLHQ
SEYQRGGSESMTNGTTGMRLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVK
NRKNMGGVKFGEMERDCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRF
CKFCCTGKHVVQIQIPYSCKLLWQELLSMGITLFLETKLS
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgatggactccaggaattgtccaccgcctgctttcgcgaggccaatttacccagaggat
ttcaacaaccctctggaagttgtgcaagactcgaccacgacccaagcttattttcaggct
accgagagtacccgccatttctacccaacacggagcccaagacggagtccgggtaggagt
cctcaccgttccgaaggacggctctcgagatcggaagaggaagttgcacgcagcgcagta
gcgaagataattttcaaaggaagaagcttagtagagcatcacttgcgatcctttaatgaa
ttcatggaatatggtttaccagccatgtttgaggaggctggcagtttcgactgcattccg
gatcactccgtcctggtggattccgggattggagtgcggaagtgggctagaattgtgtat
ggagaagttgcggtagggaagccatacactactttcacccgagaaggagtaaaggaggtt
gtggatctattgcctcacgaagctcgacttcgaaatctgtcgtattcggctcacttgtat
gtgaacatgacactggaggtttacgaaaacaggggaaacaagaagacgcaaaatccggag
gatatgatcgaaacaaaaactgatacaatttgcgtcgggaaagtcccggtcatggtgaac
tcaagtttctgccaccttcacggactttctgagaaggattcggttgcgaaaggacactgt
tcattcgatgatgggggtttcttcatcatcaagggttcggagaaggtgttgatcgctcaa
gaggaaaaggcgcaccagagtatttacgtgagttacttgaagaggacagatacttggata
gcgacgtactcgcctacatggagaggcttcaattcgaatcaaatgaatcgaggaaaaact
tttgtaaagcttcggatgagaaagaaagccgagttgttggtgggagtacctggcctcacg
gaaccagtaccccttgtcatattattcagagccctcggaacatcttctgacaaggaattc
cttgagagcatctgctacgactccaccgattctcggttccatgacctacttctttcctca
atttgggacgcagacctaattttggaggaatttcagtcgagaatttcataccctgctggt
gcctcggcaatcaagtctgtgagggatcagattctttcggtgaggtttcttggtacgaag
ctacgaaattctaggcatgtgccttccgtcgaggctgggaaaactatcatcgggcagctt
ttcgtacatacggaaggaggatacacgaggaaggcaatgctgcttggatacatggtgaat
cagctgtgctcaacattcttggggagacgactggaagatgacaaggaccacttcaaaaat
aagaggcttgatctcacgggacaattgctgagccaccagtttcgtaaggcaatggcacac
ttggagcgcgacgtgaagagacgactccatccttacctggtgaagggcagggacttggct
cctctgaaaacatacgtgacggaggcaatcgtgacaaagcagatgcagagcgcgttcacc
ttgggcaactggaacaccaacgaggggttgaagagctcgggtgtagttgcagttctgaaa
aggatgaaccccatggccactctatcccatctgcgacaatttcgactgaatctgccgccg
ccaatgaaaccaaccgaccccgcaagacacccaaactactcttactggggcaggatctgt
ccgacccagaccagcgatggagcggagtgtggccttatcaaaagcttggccctaacctgt
gtggttagctcagatacgccagaggaaccggtgttgcatgttttgagtgattgtggaatg
cactctctggaagaaattactcctcttacaatttcaatggcagagaagatatttgtgaat
ggccgctgggttggaatcttctacgactacaatgcaactctcgctattgttgctactctg
aggcagctacgccgcgaacagcttcttcatggagagattgaagtagcacgagaccccaaa
accaaagcggtgcatattcacacagatgcaggcagattgcttcggccacttctgattgtc
aaagaacaaaagttggccatgtcgaagcagcatttgaaaacgcttcgagctatgtccaaa
caagagagtgctgaggcttgctggaatttccttttggaacaacaggtggtggaactcttg
ggcacggaggaggaagagggagcactaattgctttgaaccgagatgatctggaacgagct
cggaaagacccggatgctcctctgtacacccactcagaaatcgatgtctcctacatcttt
gggttgggcgcctcagtgattccgtttctggatcacaaccaagcatctcgtaatctgtat
caagcggagaagcattgcaagcaggctatggggttctacacctccaacttatcgggcagg
tcggactgttctggacaccagctcttctacccccagaagcccctcgtcacaacgcgcaca
tgggactatctcaagaagccagagatcacaaatggccaggttgcaattgtgagcattcag
tgctgtggctacaaccaagaggactccatcatcatgaaccgagcttccattgatcgaggc
ttgtttcgatcgatgcatttcaaaacttaccgaggagaggagaggcacaacgtcatagag
cattttgccaagccgagtatttccattgcaaaaagatccaggaatgcatctctaaataaa
attgatgaggatggctttcctcacctcggagactacctggagaaaggagacatcatcatt
ggaaaattgaccgctgaaatgggaaatcctaagcttgcagactcaagccagcggttgaga
gcacacgaaaatggtcgagtggatcaggtgcttctatccagcgaagaggatggacatcgc
attgccaaagtacgactgagatgctcccgacgacctcaagccggcgacaaattctcaagc
atgcatggacaaaagggcgttatcggagctgttttgaaccaagaggatcttcccttcaca
cggcaaggagttgtgccggacatcatcattaatcctcatgcgcttcccaaccgacagaca
gtcggacagctcctggaaagcctattaggcaaattgatggcagttcgaggcacccaacaa
tctgtagcccctttccagaaacaatccgcaactcgcaaattcatggatcagctccaccag
tctgaataccagagaggaggcagcgagtccatgaccaacggcaccacggggatgagactc
aactctctcatcagcataggagccacattctaccagcgcctggaccacatggtcgaagac
aagatcaagtaccgggggagtggcggtcccgtggacgccctcacgcggcaaccagtcaag
aaccggaagaacatggggggcgtcaagttcggcgaaatggagcgggattgcatgatcggc
cacggcgcttccgtcactctccgggaacgctgcttcctcttgagcgacccctacgcaatg
ttggtgtgctcgtcttgccggcgcccttccggtcacaccgacccatctcgccgacgtttc
tgcaagttttgttgcaccgggaaacacgtcgtccagatccaaatcccttactcctgtaaa
ttgctgtggcaggagcttctcagcatgggcatcactctcttcctagaaacgaaactctct
tga
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integrated database retrieval system
