Physcomitrium patens (spreading earthmoss): 112293161
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Entry
112293161 CDS
T01041
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112293161
09122 Translation
03013 Nucleocytoplasmic transport
112293161
03015 mRNA surveillance pathway
112293161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112293161
03041 Spliceosome [BR:
ppp03041
]
112293161
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112293161
TREX complex
112293161
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112293161
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112293161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
112293161
NCBI-ProteinID:
XP_024398082
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All DBs
Position
16:complement(13189142..13192187)
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AA seq
298 aa
AA seq
DB search
MTSALDMSLDDLIKTNKTATRGGRGGGGGGGGGGGRGAAPASRRGGATAAADGGYPGSKT
SGPTRRQVSRPAVRPTPYASAKPVRRDPDSTWQHDMYENFLPAAPSSGRGVTGGIETGTK
LYISNLDYGVSNDDIKELFGEVGDLKRCSINYDRSGRSKGTAEVVFTRKPDAVSAMKRYN
NVQLDGKPMKIEMIGTNLIAAPVPAARSSGAMAMVASRGRPVSSSSMPFTRGPGSDRGRG
GSSAFRGRGGGRSAGGAGAGGRGAGGRGGGRSATAVEKTVEDLDADLESYHADAMQTN
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtgcgttggatatgtcattggacgaccttattaagacgaacaagaccgctact
cgcggtgggaggggcggtggcggtggcggtggcggtggtggtggtcgaggtgcagctcct
gcgtctcgacgagggggagcgaccgctgctgcagatgggggttaccctgggagtaaaacg
tcagggccaacccgcagacaagtgagccggcccgccgtccggccaacgccttacgcgagc
gcaaagccagtccgccgcgacccggattctacttggcaacatgacatgtatgaaaacttt
ctccctgccgcaccttcaagtggcagaggagtgactggaggcattgagacagggaccaaa
ttgtacatatccaaccttgattacggagtttcgaacgatgatatcaaggagctttttggg
gaagttggtgatttaaaaagatgctctattaattatgatcgaagtggtcgttcgaaggga
actgcggaggtggtgttcactaggaaacccgatgctgtcagtgcgatgaagagatataac
aatgttcaactcgatggaaaacctatgaagattgagatgattggcacaaatcttatagcc
gctcccgtcccagctgcgcgatcttctggagccatggcaatggttgctagtcgaggacgt
cctgtttcttcgtcatctatgccttttactcgaggacctggatctgatcgaggcagaggt
ggtagcagcgcatttcggggacgtggcggtggcagaagtgctggcggtgcaggtgctgga
ggccgaggggccggaggtagaggtgggggcagaagcgccactgccgtagagaagactgtg
gaagatctggatgccgacttagaatcttatcatgcagatgcaatgcagacaaattaa
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