Physcomitrium patens (spreading earthmoss): 112293544
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Entry
112293544 CDS
T01041
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03030
DNA replication
ppp03410
Base excision repair
ppp03420
Nucleotide excision repair
ppp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112293544
03410 Base excision repair
112293544
03420 Nucleotide excision repair
112293544
03430 Mismatch repair
112293544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppp03032
]
112293544
03036 Chromosome and associated proteins [BR:
ppp03036
]
112293544
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112293544
DNA replication proteins [BR:
ppp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112293544
DNA Replication Termination Factors
ELG1-RFC complex
112293544
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
112293544
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112293544
Check point factors
HRAD17(Rad24)-RFC complex
112293544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
Mg_chelatase
AAA_22
Rad17
Viral_helicase1
RuvB_N
AAA_28
AAA_16
RCF1-5-like_lid
AAA_11
DNAX_ATPase_lid
nSTAND3
AAA_assoc_2
AAA_3
bpMoxR
AAA_5
AAA_19
MeaB
RNA_helicase
AAA_30
AAA_25
AAA_24
IstB_IS21
AAA_7
AAA_18
ABC_tran
T2SSE
Motif
Other DBs
NCBI-GeneID:
112293544
NCBI-ProteinID:
XP_024398859
LinkDB
All DBs
Position
16:13473383..13476607
Genome browser
AA seq
333 aa
AA seq
DB search
MGTTVAATSLAKDYDLPWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGT
GKTTSILALAHELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVLL
DEADSMTAGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILD
RLLRVVEAEKVPYVPEGLEAVVFTADGDMRQALNNLQATFSGFQFVNQDNVFRVCDQPHP
LLAQQIIKHCIAGNIDDAYTGLKQLYDMGYSATDIITTLFRVVKNYEMVEFLKLEFIREV
GFAHMRIADGVGTLLQLSGLLAKLCKVRERCKA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaaccgtggccgcaacttctctggcgaaggactacgatttaccgtgggttgag
aagtaccgacctcacagagttgctgacattgttgggaaccaggatgtggtcgcccgcctc
caggtcattgcgcagggcggcaacatgcccaatctcatcttctctggcccccctggcact
ggtaagacaacaagtattcttgctctggcacacgaacttttaggtcccaacttcaaagaa
gctgtcctggagcttaacgcctccgatgacagagggattgatgtagtccgcaacaagatc
aaaatgtttgctcagaagaaagtgacattgccgccgggacgtcacaaagttgttcttttg
gatgaggccgacagcatgacagctggtgcccagcaggctctacgaaggactatggaaatt
tattccaacacaactcgatttgctttggcttgtaatttatcgtcaaagattatcgaacct
attcaaagtcgatgtgccatagttcgtttctccagattgtcagactctgaaattctagac
cgtcttcttcgagttgtcgaagcagagaaggtgccttatgtgccagaggggctagaggca
gttgtgttcactgcggatggagatatgcggcaagccttaaacaacttacaagcgacattc
agcggttttcagtttgtcaatcaagacaatgttttcagggtctgtgatcagccgcatcct
ttattagctcaacagattatcaagcactgtatagcaggcaacattgatgacgcctacaca
ggattgaagcagctctatgacatgggctactctgccactgatattatcaccactctattt
agagtagtgaaaaattatgagatggtggaatttttgaagcttgagtttattcgggaagtg
ggttttgcgcacatgcgtatagcagatggagtgggaacgctcttgcagctgtcaggtctc
ttggccaagctttgtaaagtcagagaacgatgcaaggcatag
DBGET
integrated database retrieval system
