Physcomitrium patens (spreading earthmoss): 112293550
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Entry
112293550 CDS
T01041
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112293550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112293550
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112293550
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112293550
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112293550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
112293550
NCBI-ProteinID:
XP_024398871
UniProt:
A0A2K1J7C5
LinkDB
All DBs
Position
16:complement(7591324..7598079)
Genome browser
AA seq
1269 aa
AA seq
DB search
MRMARGSGVEREREPRKLGNYTADHLIVERDVLDGDPRRVGNLAMADREREVNNTPVLMR
LGGNREEFDPAAEELLELVTQYKSALLELTFNSKPIITNLTIIAGENAHAAHGITKTICD
HIITVPEDQKLPSLYLLDSIVKNIGGEYVKYFAARLPEVFCKAYKQVDPSLYTAMQHLFW
TWRGVFPQAPLRTIETELQLNLKPVATASRTQAPRAMDPAVRPGHGIHVNPKYLEQRQLM
QQRPSRVDGTPAEINGGAKLRQDRSTLRENPKTWSETQRAIIGHFNREHLAEPVYNKEPA
LNYPDYELRRRGIARSDIIKSKQSDRFDQGESGSWFRDGDVEKGNVVPDERSQRHPRRNG
YRDDPRQPLGARPLIPDAQSYDRSVGPGRGGTFTASQSVDLESRGRGEVRNRRMDPRIPV
GADGRGRRIGLGSDVEEGRGYKMENRNLTLEAAGRGSRMDTRNMGLDGRGLGPNVRFSGP
NNRALRSETVGLGADSRGLRLDRGLGSEIVGRGNWQNEEEEEFQWEDMHPQVQEPDRKAG
DSKADEWLSVDRDMIRAGNSNRPGIEPVGGLDDWRRVGSGSQSEQFSGPAAIRGTLRRES
EERSRLAMSQSSHGSRLKVEPDMDVMNSGQTRLPPVQVTLPNFSMALSTSNVQPRPGTPP
ILSPGGRDSVQGGRGAYGLRQNYGSNLGQGPGYNSSSGVPFGQGQNDGQANGVHSSQAVP
CSVGLPQVSAGGMLQLPLFGPSQQAGNSSVQVAVISQQSGLVSSEGTQNQYPQQSGSGVV
TMQAQLNQFQQATQGGSSLGGNQGGVLPLNTAAISELLKLVQQLPASQNPMQQQQQALPS
SQTQSQIVTTGQVLQSVSGAPPLPNGSPPSFLYNSVAQQGGQYTTAQGQVLAPPMLYPSQ
AGGVPNQPPLPPGPPPASALTGNSGGQGSGGAGVNQFDNLFKSLLAQGLISAPGATAATS
VQAAVVDVRGGMNAASTSSSFFNPNVGSVQASSVQAFALSSGLGGSVGPGADSSSRYAGD
AAAGSQGVAVKDDPIGTEFKPEVLRERHEVVIDALYNDFPRQCKTCGLRFLEQEAHSKHM
DWHVSRNRRQKSQKKVSRKWFVSEKEWLSGTVASSAEAAPSFFAAEVGAGAAKADEGESL
AVPADYNQSVCALCGEPFDDFYSDERDEWMYKGAVYMNVPAGGSIEGIDSVNLGPIVHAK
CQTESAATADLTEDSEEVQPELMAADSVRMEVDVGGGDDTAMPLLDNFEALESKDENIEM
ENRKKRVRY
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgaggatggcccgtggctctggtgtcgagcgtgaaagggagccgaggaagttagggaat
tatactgccgaccatttgattgtcgaaagggatgtattggacggggacccgagaagagta
ggtaaccttgcaatggcagacagagagagggaggtgaataatactccagtgttgatgcgt
ctaggtggaaatcgagaagagtttgacccggcggcagaagagttactggaactggtaacg
cagtacaagtccgcattattagagttgacattcaactccaagcccatcatcactaatttg
actatcatagccggggagaatgctcacgccgctcacggcatcaccaagaccatctgtgac
cacattatcacggttccagaggatcagaagcttccatctttgtatctccttgacagcatt
gtaaaaaatattggaggcgagtatgtgaaatattttgctgcacgacttcctgaggttttt
tgtaaagcatacaaacaagtggatcccagtctttacacagcaatgcaacatctattttgg
acctggcggggtgttttcccacaagctcctcttagaacaatcgagacagaactgcagttg
aacctgaagcctgttgcgactgcaagtcgtactcaggccccaagagccatggaccctgct
gtgcgtcctggacatggcatacatgtgaatccgaagtacctggagcaacgtcaactaatg
cagcaaagaccaagcagggttgatggtactcctgcggagatcaacggaggtgccaaatta
agacaagatagatctacgctacgggaaaatcccaagacatggtcggaaacacaaagagca
attattgggcatttcaatcgagaacatcttgctgaaccagtttacaacaaagagcctgca
ttaaattacccagattatgagcttcggagacggggtattgcaagatccgatattattaaa
tcaaaacaatcggatagatttgatcaaggagagagcggttcatggtttcgtgacggagac
gtagaaaagggcaatgttgttcccgatgagcggtcacaacgacatcctcgtcgaaacggc
tatcgggatgatccaaggcagccgttgggagcaaggcctttaattccagatgcacagagc
tacgatcgctctgttggtccaggaagaggaggtacatttactgcatcgcagtctgtggat
cttgagagcagaggtagaggcgaagtgcggaatcgtaggatggatcctcgaattcccgtt
ggtgcggatggaaggggtcgtagaatagggctggggtctgatgtcgaggaagggcggggc
tacaagatggaaaaccgaaaccttactctggaggctgctggcagaggcagtcgaatggac
actcgtaacatgggtttagacggacgtggtctaggaccaaatgtccgtttttcagggccg
aacaaccgtgctttacgatctgaaaccgttgggctaggagcagatagtcgaggcttgagg
ttagatcggggcctgggtagcgagatcgtagggaggggaaactggcaaaatgaagaagaa
gaggaatttcaatgggaagatatgcatccacaggtacaggagccagatcgaaaggccggc
gacagtaaagcggatgaatggttaagtgtagacagggacatgataagggcaggaaattcg
aacaggccagggattgaacccgtgggaggtttggacgactggcggagagttggaagcggt
tctcaatccgaacagttctctggtccagcagcaattcggggaactctccgcagagagtct
gaggagcgcagtcgactcgcgatgtcccagtctagtcatgggtctcgtttgaaggtggag
ccggacatggatgtgatgaattctggtcagacaagattacctccagtgcaggtgacgctt
ccgaatttcagcatggcactaagtacgtcaaacgtgcaaccacgaccagggactcctcca
atcctttccccaggtggaagagacagcgttcaaggtggacgaggagcatatgggttgagg
caaaactacgggtcgaatctagggcagggtccgggttataacagctcgtctggtgttccg
tttggtcaaggccagaatgatgggcaggcgaacggagtacattcctcgcaggcagttcca
tgttcagtaggtttaccgcaagtgtctgcaggtggaatgttgcaattgcctctgtttggt
ccgagtcagcaggcaggtaattcgagcgtgcaggttgcggtgatatctcagcagagcggt
cttgtgagttcagagggcacgcagaaccagtacccgcaacaaagcgggagtggagtggtg
acaatgcaagcgcagttgaatcagttccagcaggcaacacaaggagggtcaagtttgggt
ggtaatcagggtggtgttctccccctgaacaccgcagcgatttctgagctgctgaaacta
gtacagcagttgccagcttcgcagaacccgatgcagcaacagcagcaagcgcttccttca
tcgcaaacccagtcgcagattgtaacgacgggtcaggtgttgcagtcggtttcaggcgca
cctcctctaccgaacggttcgccgcctagttttttgtacaactcggtagcacaacaggga
gggcagtacacgacagcacagggtcaggtgctggcgcctccaatgctgtaccccagccag
gcgggaggtgttccgaaccagcctcctcttcctcctggtccgccaccagcgtcagctctg
acgggcaattccgggggtcaggggtctgggggagcgggagtgaaccagttcgacaacctg
ttcaagtcgctgctagctcaaggcctgatatctgctcccggtgcgacggctgcgacgagt
gtccaagctgcggtggtggatgtgcgaggagggatgaacgcggcgagcacgagttcgtcg
ttcttcaacccaaatgtaggcagcgtgcaggcgagcagtgtgcaggcgtttgcgctttcg
agtggtttggggggcagcgtgggtcccggcgcggacagctcatctcggtacgcgggtgat
gcagcagcagggagccagggtgtggcagtgaaggatgatccaatcgggacggagttcaag
ccggaagtgttgagggagaggcacgaggtggtaatagacgcgctgtacaatgattttcct
cggcaatgcaagacgtgcgggcttcgatttttggagcaagaggctcacagcaagcacatg
gattggcatgtatcgaggaacaggcggcagaagtcgcagaagaaggtgtcacggaagtgg
ttcgtaagcgagaaggagtggctgagcgggacggtggcatcgagtgcggaagcggcgcct
agttttttcgctgcagaggtgggtgcaggtgcagcgaaagcggacgagggcgagagtctg
gcggttccagcagattacaaccagagcgtgtgcgcgttgtgtggagagccattcgatgat
ttttacagcgacgagagggatgagtggatgtacaagggtgcggtgtatatgaacgttcct
gcgggcggttctatagaggggatcgacagtgtaaatttggggcccattgttcacgcgaag
tgccagacggagtctgcagcgacggcagatctaacggaggacagcgaggaggttcaaccg
gagttgatggcagcagatagtgttcgcatggaggttgatgtgggagggggagatgataca
gccatgccgttactagacaattttgaagctttggaaagcaaggacgagaacattgaaatg
gagaacaggaagaagagagtccggtattga
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