Physcomitrium patens (spreading earthmoss): 112293873
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Entry
112293873 CDS
T01041
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112293873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112293873
03041 Spliceosome [BR:
ppp03041
]
112293873
03036 Chromosome and associated proteins [BR:
ppp03036
]
112293873
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112293873
Spliceosome [BR:
ppp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112293873
Complex B
112293873
Complex C
U2 SnRNP specific factors
112293873
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112293873
TFTC complex
112293873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
112293873
NCBI-ProteinID:
XP_024399574
UniProt:
A9TB22
LinkDB
All DBs
Position
16:complement(674967..679709)
Genome browser
AA seq
1214 aa
AA seq
DB search
MFLYNLTLQPATGIVCATYGNFTGGKSQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNIFEKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDNAARLTISSPLEAHKSHTIVYSITGVDCGFDNPI
FAAIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVVRKWTEPIDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQNQPDIRAVIPRRQDLPPNRGVLIVSAATHKQKALFFFLLQ
TEYGDIFKVTLDYDKDDQVTELKIKYFDTIPVTSAMCVLKSGFLFAASEFGNHSLYQFQS
IGEEPEVESSSSTLVETEEGYQPIFFQPRKLKNLVQIDDIESLMPIMDMKVANIFEEETP
QIFSLCGRGPRSSLRILRPGLAVTEMAVSPLPGVPSAVWTVKKHANDEFDAYIVVSFVNA
TLVLSIGETVEEVSDSGFLDTTPSLAISLLGDDSLMQVHPSGIRHIRADGRINEWKTPGK
KTIVKVGYNRMQVVIALSGGELIYFEMDMSGQLMEIEKRDMTGDVACLHIAPVPEGRQRS
RFLAVGSYDSTIRILSLDPDDCMQILSVQAVSSPPESLLLLEVQASTGGEDGADHPASVF
LNAGLQNGVLLRTEVDMVTGQLSDTRTRFLGLRAPKLFSARVRGRRAMLCLSSRPWLGYI
HQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNQTVVPLRYT
PRKFILHPKQKSLIILESDLGAFSTEEREANKKEAVKATGGRDDEKANGEDEEMADGENE
DPLPDEQYGYPKAESNKWASCIRVLDPKTSTTTCLLELQENEAAFSLCAVNFHDNKELGT
LIAVGTAKNMQFMPKKESSGGFIHIYRFVEEGRILELVHKTPVDGVPTALCQFQGRLLVG
VGQVLRIYDLGKRKLLRKCENKNFPNTIIAIHTYGDRIYVGDIQESFHYVKYRRDENQLY
TFADDSCPRWLTASLHIDFDTMAGADKFGNVYVMRLPQDVSEEIEDDPTGGKIKWEQGRL
NGAPNKVEEIIQFHVGEVVTSLQKASLIPGGGESVLYGTIMGSVGALLPFSSREDVDFFS
HLEMHLRQENPPLCGRDHMAFRSAYFPVKDVIDGDLCEQYPMLTSELQRKIADDLDRTPG
EVLKKLEDIRNRII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtataatttgacgttgcaaccggcaacgggaatagtgtgtgcaacatatggc
aatttcacgggtggcaagagccaggagattgtggtagctagaggtaaggtgctggacttg
ctgcgacctgatgacaatgggaaattgcagacgctgctctcagtggaaatatttggagcc
atacggtctcttgcgcaattccgcctcactggttcccagaaggattatattgtcgtaggc
tccgactcaggtcgcatagtgatccttgagtataacaaagagaaaaacatctttgaaaag
gtgcaccaggagacatttgggaagtcaggatgtcggaggattgtacctgggcaatatttg
gctgtagaccccaagggacgtgctgtaatgatcggtgcttgcgaaaagcagaagctggtt
tatgtgctgaaccgcgataatgctgcgcgcctcacaatttcgtcccccttagaggctcac
aaatcgcataccatagtttattccatcacgggtgttgattgtggctttgataaccctatc
ttcgctgccattgagctagattactccgaggcagaccaggactcgacagggcaggccgca
aacgaagcgcagaagcacttgacgttttatgagctcgatttagggcttaaccacgttgtt
cggaaatggacagaacctattgataatggagctaatatgctagttacagtacctggtggt
ggggatggaccgagcggggtgctcgtttgtgcagaaaattttgttatttacaagaatcaa
aatcagcctgatattcgtgcagttattccacggaggcaggacctacctccgaatagagga
gtattgatcgtttccgctgccactcacaagcagaaagctctgttcttcttcttgttgcag
accgaatatggtgacatttttaaagtcaccttggactacgacaaggatgatcaagtgacc
gagctgaagattaagtactttgacaccatccccgtgacctctgcaatgtgcgttttgaaa
tctggtttcctattcgctgcttcggaattcggaaatcattctttgtatcaattccaaagt
attggtgaagaaccggaggtggagtcatcgtcttccactcttgtggaaactgaagagggt
tatcagcctattttcttccagcccaggaaacttaagaatttggtacagattgatgatatt
gagagtttgatgcccattatggacatgaaagtggccaatatttttgaagaggaaactcca
cagatcttttccttgtgcggcaggggtcccaggtcatctcttcgcatactacgccccggt
cttgcagtgacagaaatggccgtgtctccgcttcctggagtgcccagtgccgtgtggacc
gttaagaagcatgccaatgatgagttcgatgcttacattgtggtgtcctttgtgaacgct
actttggttctttctattggggaaaccgttgaggaagtaagtgacagtggtttcttggac
acgactccttccttagcaatctctcttctgggtgacgactcacttatgcaagtgcaccca
agtggtattcgtcatatcagggccgatgggcgtatcaacgagtggaaaacacctggaaag
aagaccatcgtgaaagttggatacaatcgaatgcaggtggttattgccctcagtgggggg
gagcttatttactttgagatggacatgtcaggtcagctgatggaaattgagaagcgggac
atgacgggagatgttgcttgcctccacattgcgcctgtgcctgaaggccgtcagcggtca
cggttcttagctgttggttcatatgacagcaccattcggatcctgtccctggatccagat
gattgtatgcagattttgagtgttcaagcagtctcatctccaccggaatcgctcctcctt
cttgaagtgcaggcttcgacaggaggtgaagatggtgcagatcacccagcgagcgtcttt
cttaatgctgggttacagaatggagtgctgctcaggaccgaagtagatatggtgactgga
cagctatcagacacacgtacccgatttttaggtctgcgagcccccaagctcttctcggct
cgagttagggggaggcgggcgatgttatgtctttcgagcagaccttggcttggttatatt
catcaaggccatttcttattgacgccgttgtcgtatgaaaccttggagtatgctgcatct
ttttcctcagatcagtgcgcagaaggtgtcgtggcagtggctggagatgcgcttcgcgta
tttactatcgagagacttggcgagacattcaatcaaacagttgtgcccctccggtatacc
cctcgcaagttcattcttcatcccaaacagaaatctctcattattctcgagagtgatcta
ggtgcttttagtacagaggagcgggaagctaataaaaaggaagcagtgaaggctacaggt
ggtcgcgatgatgagaaagcaaatggagaggatgaagaaatggctgacggggagaacgag
gatcctcttcctgatgagcaatatggctatccaaaagcagagtcgaacaagtgggcgtct
tgcattcgagtattggatccaaagacgagcacaaccacttgccttctggagttgcaagaa
aatgaagcagccttcagcctatgcgctgttaattttcatgataacaaggaattggggact
cttatagctgttggaaccgctaagaatatgcagtttatgccaaagaaagagtcatctggt
ggctttatacacatttataggtttgtagaagaagggaggatccttgaacttgtgcataag
actcccgtggatggggttcctacagctctgtgtcagttccaaggtcgtcttctggttggg
gtaggtcaagtgttgagaatatacgatcttggaaaaagaaagttgctgcgtaagtgtgag
aacaaaaattttccgaacacaattatcgctatccacacatatggcgacagaatatatgtt
ggtgatatacaagagtcattccattatgttaaataccgacgggacgaaaatcagctgtac
acttttgcggatgatagctgcccgcggtggttgactgcgtcacttcatatcgattttgac
actatggctggagcggacaagtttggtaatgtttacgtcatgcgattacctcaagatgtt
tcagaggagatagaagatgaccctactggaggtaaaattaaatgggagcaaggtcgattg
aatggggcgccaaacaaggttgaggagattatccagtttcatgttggagaagtagtcaca
agcttgcaaaaagcatctctcattccaggcggaggagaaagtgtgctctacggcactatc
atgggaagcgtgggagctctgttgccattttcatcccgtgaagatgtggacttcttctct
catcttgagatgcacttgcgacaagagaatccacctttgtgtggtcgtgatcacatggca
tttcgatctgcatatttccctgtcaaggatgtaattgatggagatctatgtgagcagtat
ccaatgcttacatccgagttgcaaagaaagattgctgacgaccttgatcgaaccccaggt
gaagttttgaagaagctcgaggacatcaggaatcgaattatttaa
DBGET
integrated database retrieval system
