KEGG   Physcomitrium patens (spreading earthmoss): 112293988
Entry
112293988         CDS       T01041                                 
Name
(RefSeq) WD repeat-containing protein VIP3 isoform X1
  KO
K12602  WD repeat-containing protein 61
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112293988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112293988
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     112293988
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT122_1st eIF2A Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_WDR35_TULP_N WD_LRWD1 NBCH_WD40 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_ACSF4 Tricorn_2nd Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_RIG_1st Beta-prop_VPS8 WD40_like Beta-prop_pof12 B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 112293988
NCBI-ProteinID: XP_024399797
LinkDB
Position
2:complement(18895086..18897922)
AA seq 323 aa
MKVNSLKNVAGAHNDGIWAAAWAPATDSRPGLLITGSVDETVKLWRGDELECERTNTGHS
LGVVAVAAHPGGRIAASTSLDSFVRVFDIDSNATVTTLEAPPSEAWLMQFDPKGELLAVA
GGGSCSVKIWNTTSWKLEQSLTVPKAENGADGKAADKVGLGKFVLGVAWSMDGKNLACST
MDGTVAIFDVGKGKLIHTLEGHNMPVRSLVFSPADNHVLFTACDDKHIHMYDARSRMLVS
AFSGHASWVLSVDASPEGAAIATGSSDKTVRLWDLKMRASIQTVTDHTDQVWAVAFRPSG
EGSSSGRLASVSDDKSISLYEYT
NT seq 972 nt   +upstreamnt  +downstreamnt
atgaaggtgaacagtttgaagaatgtggcaggggcgcacaatgatggcatctgggcggcg
gcgtgggctcccgcgacggactcgaggcctgggttgctcatcactggatccgtggacgag
acagtgaagctgtggagaggagacgagctggagtgcgagcggaccaacacaggtcattcg
ctgggtgtggttgcagtagcggcacatccgggaggcagaatcgcagcttcgacgtctctg
gacagtttcgtgcgggtgttcgacatcgactcgaatgctaccgtgacgaccctggaggcc
cctccatcagaagcgtggctgatgcaatttgatcccaagggtgaactcctggcagtcgca
ggaggagggagttgttcggtgaagatatggaacacaacgagttggaaactggagcagtct
ctgacggttcctaaggccgagaatggtgcggacggcaaagcagcagacaaggtggggctg
gggaagttcgtgttgggagtggcgtggagcatggacgggaagaatctggcttgcagcacg
atggacgggacagtggcaatcttcgacgtgggcaaggggaagctgatccacacattggaa
gggcacaacatgccagtgaggtcgctggtgttttctccagcggacaaccacgttctgttc
accgcatgcgatgacaagcacatccacatgtacgacgcgaggagtaggatgctggtgagt
gcgttctcagggcacgcgagctgggtgctgagcgtggacgcgagtccggagggggcagcc
atcgcgacagggtcaagcgacaagacggtgcggctgtgggacctgaagatgcgggcgtcg
atacaaaccgtgacagatcacacggatcaagtgtgggcagtagcgtttcgtcctagcggg
gagggtagcagttctggaaggctggctagtgtgtcagatgacaagagcatatctctgtac
gagtacacatga

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