Physcomitrium patens (spreading earthmoss): 112294084
Help
Entry
112294084 CDS
T01041
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppp03016
]
112294084
Enzymes [BR:
ppp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
112294084
Transfer RNA biogenesis [BR:
ppp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
112294084
Prokaryotic type
112294084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF7712
Motif
Other DBs
NCBI-GeneID:
112294084
NCBI-ProteinID:
XP_024399998
UniProt:
A0A2K1L2I0
LinkDB
All DBs
Position
2:13943693..13947282
Genome browser
AA seq
641 aa
AA seq
DB search
MHGSVLLDPNVQPLALQRAELLRRKHPLDQGQCVLMLTSVNNAVSSSFPVPFLISLNMFR
FRPRLASASFPLVPFSPGTTYRFHAFQLSSTFSYQGVSSITSAARLTSSRHGRCTKRAPC
GAPASAHNGAVAEDLFGKSSPQAISERRIKKKVAMWLGYVGTRYKGLQIQRGPGSAQTIE
EELELAIFKAGGMIESNFGNLSKISWTRSSRTDKGVHSLCTVISMKMEVPEAAWVNDMDG
FALADNINFHLSPFIRVFGITPVTRSFRARHDCCTRTYDYLLPAAILGIHPDTVPSQVEQ
RVTKFRSLLHLFEGKHAYHNYTIRRLYRPFPEKPYKSRLNDRNDNDTSNERTDKPSTTTS
SIELDFLDEEDIMEELPDVLASELVDEMVSIFAEDSRRGDNELERSTFTLPGGNVTDLKA
WWLPTPNESDKVWSSHFRKVISFNCGMPETFGEAQFIRISITGSSFMVHQIRKMIGTAIA
VFHGLLPGDVIPISLARHSRIVLPLAPPDGLILVSNDFMPFRLPSVHPKKSDIEPNKPPA
LRIQEKHPKLEMSSAVRERVDEFCANVLMPDISPLISAKSSNWSIWIMNLERNVKIPESE
IAEVRAAWTEWREQSVRLRQMKNQINHHVPDLSQNDRVLES
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcacggttcggtgctactggaccccaatgtgcagcctctggctttgcaacgcgctgag
ttactccgccgaaaacatcccttggatcaaggacagtgtgttcttatgctcacttcagtc
aacaatgctgtctcttcctcattccctgttccctttcttatctctctcaatatgttccgc
ttccggcctcgcctggcctcggcttccttccccttggtccccttttctccaggtaccact
taccgctttcatgctttccaattgtcgtccaccttctcctatcaaggagtgtcttccatt
acctctgccgctcgattaacgtcttcccgtcacggtcgttgcactaagcgggctccatgt
ggagctcctgcatccgctcacaacggcgcagtcgccgaggacttgtttggaaagtcctca
cctcaggccatttccgagaggaggattaagaagaaagtagccatgtggttgggatatgtc
ggtactcgttacaaaggcctacagatccagcgaggaccagggagtgctcagaccattgaa
gaggagcttgaacttgccatattcaaagctggaggcatgattgagagcaatttcggtaat
ctttcaaaaatttcatggacacgaagcagccgtacagacaagggggtgcattctttatgt
acagtaatatctatgaagatggaagttccagaggcagcttgggtgaatgacatggacggt
tttgcccttgccgataacattaattttcatctgtctccatttatacgagtttttggtatc
acgcctgtcacaaggtcatttcgagcgcgacacgactgttgtacacgtacatacgactac
ctcctacctgccgccatccttggcatacatccagacactgttccttcacaagtcgagcag
cgcgtgacaaagtttcggtctcttcttcacctttttgagggtaagcatgcgtaccacaat
tacacgattcggagactatacagacctttccctgaaaagccttacaagtctcgcctaaac
gatcgtaatgacaatgatacgagcaatgagagaactgacaagccctcaacgactaccagt
agtatcgagttggactttttggatgaagaggacatcatggaggagctccctgatgtgcta
gcaagcgagttggtagatgaaatggtgagtatatttgctgaagatagcagaaggggtgac
aacgaactggagaggtcaacttttactttacctggagggaatgtaactgaccttaaagca
tggtggcttcccactccaaacgaatcagacaaagtatggtcgtctcatttcagaaaagtt
atctctttcaattgtggaatgcccgagacatttggggaagctcaatttatacggatctcc
atcacagggagctctttcatggttcatcagatccgcaaaatgataggtaccgctatcgca
gttttccatgggctcctgccaggagatgtaattcctatttcacttgcgcgacattcaagg
atagttttaccgctggctcctccagatggccttattttagtcagcaatgacttcatgcca
ttcagacttccctccgtacatccaaagaaaagcgacattgaaccaaacaaaccaccggca
ctacgtatccaagaaaagcatcccaagttggagatgagcagtgctgttcgcgaaagagtg
gacgaattttgtgcaaatgttttgatgccagatatatcgccattaataagtgcgaaatca
tcaaattggagcatctggattatgaacttggaaagaaacgtaaagattcccgaatccgaa
atagcagaggttagggcagcttggactgagtggcgtgaacaaagcgtcagactacgccag
atgaaaaaccaaatcaaccaccatgtgcctgacttgtctcaaaatgatcgagtgcttgaa
tcgtaa
DBGET
integrated database retrieval system
