Physcomitrium patens (spreading earthmoss): 112294596
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Entry
112294596 CDS
T01041
Name
(RefSeq) U-box domain-containing protein 13 isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112294596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppp04121
]
112294596
Enzymes [BR:
ppp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112294596
Ubiquitin system [BR:
ppp04121
]
Ubiquitin ligases (E3)
U-box type E3
112294596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
U-box
MCAfunc
MLKL_N
HEAT_2
DUF7792
zf-RING_UBOX
zf-Nse
zf-C3HC4_4
zf-C3HC4_2
HEAT_EZ
KAP
Arm_2
DUF7001
zf-C3HC4
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112294596
NCBI-ProteinID:
XP_024401002
LinkDB
All DBs
Position
17:464077..467789
Genome browser
AA seq
681 aa
AA seq
DB search
MADSHLSQVQLIQSLIDVVNTIGLKGDYIKSHKKECALLTRRVKLLAPLFEELRESRQKM
SYKTCTALHDLEEALQSANKLLQMCHDGSKLYLVLERQAAAEQFDKVNADLECALDALPY
DQFASDEVKEQVDLVRSQLKRAKGRVDNHDSQIHSSLVAVLHEKEDSSAGFEELQMLAEK
LELRTPAAIRQENQALQEMMLEKQNLGDDNHEQEMCFQQLFTVLRKLTSILPPEESDEDT
PELDRVNIAAGVYVSKATKHHAEIRAGLGIEGRGSQISDVESAGAEKAKMQVVPDDFKCP
ISLDLMKDPVIVATGQTYERACIQRWLDSGHKTCPKTGVLLTHLGLTPNYSLRSVIAQWC
ESVGMEVPNQVSSKPKPSKLLEYSSGERATVEHLLLKLRSGQADMQRAAAGELRLLAKRN
VENRVCIAEAGAIPLLIGLLSTEDLKTQEHAVTALLNLSINDANKGIIVNAGAIKPIVEV
LKNGSKEARENAAATLFSLSVVDENKVTIGSLGAIPALVDLLKDGTARGKKDAATALFNL
SIYQGNKARAVRAGVVPPLMDLLRDPSAGMVDEALAILAILATHPDGRLAIGQASALPIL
VDLIKSGSPRNKENAVAITVNLATHDPVHLVTTYKLGAQDPLRSLVNDGTPRAKRKAAQL
LENMRKQLESTQPFTGSECCT
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagtcacctgtcgcaagtacagctgattcagtccctcatagacgtggttaat
accataggtttaaaaggagattatatcaaaagccacaagaaggagtgtgctttgctgacc
aggagagtgaagctgctggcaccactattcgaagagctgagggagtctcgtcagaagatg
tcttataaaacttgtactgctcttcatgacttagaagaagctctgcaatcagcgaacaag
ttgctccaaatgtgccatgatggaagcaagctatacctggtcttggagagacaagctgcc
gcagagcaatttgataaagtgaatgccgacctggagtgtgcactggatgcacttccatac
gatcagtttgcttcagatgaagttaaagaacaggttgaccttgttcgaagccagctcaaa
cgtgctaaagggagggtagataaccacgattcacaaatccattcaagtttggttgcagtc
ctacatgagaaggaggatagttcagctggatttgaagaacttcagatgttagcggagaaa
cttgaactgcgaactcctgctgccattagacaagagaatcaagcattgcaggagatgatg
cttgagaaacagaaccttggtgacgataatcatgagcaggaaatgtgctttcaacagttg
ttcactgttttgcgaaagctgacgagtatcttaccaccagaagaatcagatgaggacact
cctgagttagacagggtaaacattgcagctggagtttacgtatcaaaggctacgaagcac
cacgcagagatccgagcagggttaggtattgagggacggggttcgcagatatcagatgtc
gaaagcgcgggcgctgagaaagcgaagatgcaagtagtacccgacgatttcaagtgcccg
atttcgttggacttaatgaaagatcctgtaattgttgcaactgggcagacctatgaacgt
gcatgtatacaaagatggctggatagtggtcacaagacttgcccaaagacaggtgttctc
ctaactcacttggggctgacccccaattacagtcttcgtagtgttattgcccaatggtgt
gaatctgttggcatggaagttcccaatcaggtcagtagcaaaccgaaaccatctaaacta
ttagaatattcttctggcgagcgtgccactgttgaacatcttcttctaaaactcagaagc
ggccaagctgacatgcagcgggccgcagctggagagcttcggttattggcaaagaggaat
gttgagaacagagtctgtattgctgaagcgggggctatacctttgttaatcggcctcctc
tcgactgaagatctgaaaacccaggagcatgcagtgactgctttgctaaacctgtccatc
aatgatgctaacaaaggaatcattgtaaatgccggagctatcaagccaattgtggaagtt
cttaagaacggaagcaaggaggcccgagagaatgctgcagctactttattttctctttca
gtggtggacgaaaacaaggtaactatcggaagccttggggccattcctgctcttgttgat
ctattgaaggatggaaccgcacgggggaaaaaagacgccgctactgctttatttaatctg
tcaatataccaggggaacaaagctcgcgcagtaagggctggtgtagttccacctctcatg
gacttgttgagagatcctagtgccggtatggtagacgaagcccttgctattcttgccatt
ctagccactcatccggatggtcgcttggccattgggcaagcttcagctttacctatactt
gtggacctcataaaatcaggctctcctcgaaataaggaaaatgctgtagcaataactgtt
aacttggccacccatgaccccgtgcatctggtgacaacttacaagttgggagctcaagat
ccattacgttctcttgtaaatgatggaactccgcgtgcaaagagaaaagctgcccaactt
cttgagaacatgcggaagcagttggaatccacccagccgtttacaggctcagaatgttgt
acgtag
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