Physcomitrium patens (spreading earthmoss): 112294781
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Entry
112294781 CDS
T01041
Name
(RefSeq) pre-mRNA splicing factor SR-like 1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112294781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112294781
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112294781
Complex C
U4/U6.U5 tri-SnRNP related factors
112294781
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
112294781
NCBI-ProteinID:
XP_024401374
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Position
17:complement(4445242..4448181)
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AA seq
443 aa
AA seq
DB search
MSAQEVQTCGKPLDTLIERVLCTNILSSDYFKELFGLQTYTEVVDEIYNHVDHVEPWMTG
NCRGPSTAFCLLYKLFTLKFTVKQMQDILDHPDSPYIRALGFLYLRYVGDPKTIWDWFEP
YVKDPEEFSPGSNKKMTTMGVYVRDIILNQYYFDTLFPRIPVPILRQITACLERMKLPTQ
PSGVTGNSSRHGSDDTARRPPSVKAALSVSFGQRAPHRAFTRDSSPVRRTAPIREAGGAD
AERDKNRDYGRDKGRNSRDRDRRDSEARDRGRDGEQKDRAIERERERSRDYDREGSRGRG
RDERDRDNVRDYSRYRDVDRSRDSERDRSRNRDRGWEREDDRSRDRRRDRSLNRDRTRER
KYNGERLRSRTRSRSPAHHSEGVDRNRSRSPARAAPASNNLKKLLDVYGDASHAKSENDT
TSGFNSKASVDDDVIHLGGSRWR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcacaggaagttcaaacgtgcgggaaacctctagatactctcattgaaagagtg
ctatgcacgaacatattgtcttctgattacttcaaagagctctttggtcttcagacatac
accgaagttgtggacgagatttataatcacgtggaccacgtggagccatggatgactggg
aactgccgtggtccgtcaacagcgttttgtttactctacaagctatttactttgaaattc
accgtgaaacagatgcaagatatacttgaccatccagactctccatacattcgggctcta
gggtttttatacctgaggtacgttggagaccctaagactatctgggattggttcgaacca
tatgtgaaggacccggaagaattttctccaggttcgaacaagaaaatgacaacaatgggt
gtatatgtgcgggacattattttgaatcagtactatttcgatactctctttccccgcatt
cctgttcctattctgcggcaaatcactgcatgccttgaacgtatgaagcttccaactcaa
ccctcgggagttactgggaacagtagtcgacatggttcagatgatacagctagaagacca
ccctccgtcaaggcagccttgtcagtgtctttcgggcagcgagctccccaccgggcattt
actcgagattcttctcctgttcgccgaacagcaccgattcgggaggctggaggcgcagac
gctgaaagagacaaaaacagggattatggtcgagacaaagggaggaactctcgagacagg
gacaggcgtgacagtgaagctcgggaccgtgggcgtgacggggagcagaaggatagagcc
atagaacgagagagagaaaggagtagggattatgatcgtgaaggaagtcgcggaaggggt
agagatgaaagggacagagacaatgtcagggattattctagatatagggacgtagacaga
agtcgagatagtgaacgggacagatcaaggaatagagatagagggtgggagagggaggat
gacaggtctagggacagaaggagagatcgtagtcttaacagggatagaacaagagaaaga
aagtataatggtgaacggctccgtagtcgaactcgcagtcgcagtcctgcgcatcacagt
gaaggtgtggatcgtaatagatccagaagccccgctagggctgctcctgcgtcaaataat
ctgaagaagttgctggatgtctatggagatgctagccatgcaaagagtgagaatgatact
accagtggcttcaattcaaaagcgtcagttgatgatgatgtcattcatcttggaggctca
agatggaggtag
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