Physcomitrium patens (spreading earthmoss): 112294940
Help
Entry
112294940 CDS
T01041
Name
(RefSeq) small RNA degrading nuclease 1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112294940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppp03009
]
112294940
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
RNases
112294940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
RRM_fung
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
112294940
NCBI-ProteinID:
XP_024401723
UniProt:
A0A2K1J1U4
LinkDB
All DBs
Position
18:complement(14819964..14824140)
Genome browser
AA seq
614 aa
AA seq
DB search
MVSCAAFQAVSRAEFGIGFAMAAMKRQIYLTGFKETDHELLVKIVKGAQWRQIKGKQGDW
KEFVAMVNKKRGGTHSDPARHPVDVLAAFVQTFTKKEDVELVKRLRNWATYCSNQKLLNE
THPFAKTPEQELVDATQSHPRFGSFYNFPSWMEGWKHSKRGDPDSPVKLVSLDCEMVTCE
GDVKELVRVCAVGSDYNTLVDELVVPNGKVTDYLTSITGVSEKDLQRVTLSQAGVQKLVL
DLLTPGTILVGHSLHYDLRALQIDHKRVIDTSLLFRDPSWPPSYSPSLSNLCQSILKYKF
REDDKPHDCLDDSIVPMRLVHYRLEHAVSTLSLEFPRKEVNQGDLSKLFLHKLPSSISLT
LLRSIFPKDLACRIQDIMFKNRGKTGSTVAVFDSAEEADSAFEQLEGVLGKDSAGYPQKT
VSLMYPSGNQMRMAEFQVRKMVNSRSVIAPRQENEESQVMKACTKRPTVDDVVGENNDEP
KRRKISSGTAADARCSKVVELEDHDGINVPQTDSTSILGRSDSSKKTPWANKYQLLEQLN
DEDEEVEEGEISEGETKDAAERPGHKVCSCSHLQELEALKSELVKVRKESKSKADEIKSL
QKLVAALSRREGLA
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtttcctgtgcagcgtttcaggctgtgtcgcgagcagaatttggaatcggcttcgcg
atggcggccatgaagcggcaaatatacttgactggattcaaggaaaccgatcacgagctt
ttggtgaagattgtgaagggggcgcaatggaggcagattaaggggaagcaaggtgattgg
aaggagtttgtggcgatggtgaataagaagaggggtgggactcatagtgaccctgctagg
catcccgtggacgtgcttgctgcatttgtccagactttcaccaaaaaagaagatgttgag
ctggtgaaaaggttgcggaattgggccacttattgttcgaatcaaaagttgttgaatgag
actcatccatttgcgaagaccccggaacaggagctggtggacgctactcaatcccatcca
cgctttgggtctttctacaacttcccatcttggatggaggggtggaaacattcgaagaga
ggagaccctgacagccctgtgaagctggtgtcacttgattgtgagatggtcacttgtgaa
ggtgatgtcaaagaacttgttcgcgtatgtgctgttggtagtgattacaatactttagtt
gacgagttagttgtgcccaacgggaaggtgactgactacttaacaagcattactggggtt
tcagagaaggatctacaaagagtcaccttgtctcaggctggcgttcagaagctggtgttg
gatttattgactccaggcactattcttgttggacatagcttacactatgatttgagagct
ttgcaaatcgaccataaacgggtgatcgacacatctttgttgtttcgagaccctagttgg
ccgccttcttactctccaagcctttccaatctttgccaatctatcttgaagtacaagttt
agggaggatgacaaacctcacgattgcttagacgactccattgttccaatgcgattggtt
cattatcggctcgagcatgctgtcagcactttgtctcttgaattcccgcgaaaggaggta
aatcaaggagatttatccaaattattcttgcacaagctgcctagctcgatctctttaact
ttgcttaggtctatctttccaaaagatctagcctgtcgaattcaggatatcatgttcaag
aatagagggaaaacaggctcaactgtagccgtttttgatagcgctgaagaagcagacagt
gcgttcgagcagctggagggagtgttgggcaaggattcagccgggtacccacaaaagaca
gtgagcttgatgtacccgtcaggaaatcaaatgagaatggcagaatttcaagtgcgcaaa
atggtgaactctaggtcagtgatcgcacctagacaggaaaacgaggaatctcaagtgatg
aaagcctgcacaaagaggccaacagttgacgacgtcgttggtgagaataatgacgaaccc
aaacgacggaaaattagctccggtactgctgcggatgcgaggtgtagtaaagtggttgaa
ttggaggaccatgatggtatcaatgtaccacaaactgacagcacgtccatattggggcga
tcagattcctcgaaaaaaacaccttgggcgaacaaataccagctcttggagcaactaaac
gacgaggatgaagaggtagaagaaggagagatttccgaaggggaaactaaggacgcagct
gaacggcccgggcacaaagtatgctcctgctctcatctccaagagctagaagctttgaaa
tcagaactcgtcaaagtgcgcaaggaatcaaaatctaaagcagatgagatcaagtcgtta
cagaagttagttgctgcattgtctcgcagggaaggtcttgcttga
DBGET
integrated database retrieval system
