Physcomitrium patens (spreading earthmoss): 112295026
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Entry
112295026 CDS
T01041
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112295026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112295026
03012 Translation factors [BR:
ppp03012
]
112295026
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112295026
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112295026
Translation factors [BR:
ppp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112295026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
AAA_16
nSTAND3
ATPase
AAA_11
AAA_30
NACHT
Motif
Other DBs
NCBI-GeneID:
112295026
NCBI-ProteinID:
XP_024401897
UniProt:
A0A2K1L418
LinkDB
All DBs
Position
2:21684159..21689200
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AA seq
1238 aa
AA seq
DB search
MLYAARSYSKGSVESMLGSCISTVATPSTAHVAVLSSSSYSAVLSSSVKFDKMLRVIRFQ
AHRRLIRRSDIRHDLRYCRQLEPSTQPHDYSPQAFDSCGSYVIEAGLETKESKGHGLYSF
RSYFPTTRASLADSPFRRFKKDKEIMGRRDLLSLPHVYNRRNIFGDVGPITQVRELGYYS
YQEYSDDESGFYENDVIPQYVDIERWRWRLNQFLRDGKQQEMVCTDKKDRRDHDHIGDLM
KQMGLHMKLYSKVLVISKAPLPNYRPDLDERRPQRLVSFPSQVQRKVDALLKEFAFRKKQ
GLMSASEGGDIDEDTCSDVVDAGLETADMLPGMANAVQELQNKRNRQIRNKQRGWQESEE
GQRILEFRKSLPAYKQRDALLAAVARNQVVVVSGETGCGKTTQLPQYILESEIEAGRGAT
CSVICTQPRRISAVSVAERVAAERGENIGESVGYQVRLEGMRSRQTQLLFCTTGILLRRL
MNDRELKGVSHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLRLVLMSATLNADLFSSYFN
RAPMAHIPGFTYPVKSYFLEDILETTGYRLTATNQIDDYGQDKQWKIRKQYVTTRKKNPL
NSLADDALAGEDFRHLSPRTQASLAAWSPDNLGFNLIENVLLHVTQHEQEGAVLVFMTGW
EEITALKEQLQRHPVLGNPDVAQILACHGTMATAEQKLIFEHPPPGVRKIVLATNMAETS
ITINDVVFVIDCGKAKETSYDALNNTPCLLPTWISQASARQRRGRAGRVTPGISYHLYPR
AVYDAFAEYQQPELLRTPLHSLCLQIKSLKLGSVSQFLSRALQPPEPLAVQNSVELLKTI
GALDEKENLTRLGKHLSLLPVEPNIGKMLIMGSIFGCLDPILTIAAGLAVRDPFIMPSEK
KELADESRLSFAGGDASDHIALVRAYEGWQEAMTYGTAYDYCWKNFLSFQTLQGMTSLRK
QFSSVLRDAGFLDNDMEKFNKYSGDRDLVRGVICSGMYPGVISVYRRTRSTTFKTIEDGQ
VMLHQNSVNSKDVDFLYPWLVFTDKVKTSNVMIRDTTGVSDSMLLLFGGQVNQGGEPGHL
VMNNGFMEFFMEPSVALMYLRLRKELDDLISRKLANPEMSIYEEGKVLMRAVFEVLDADQ
CEGSFTFGRKVKASKPLTRSSDSSDVKGLLQTLLLRAGKKPPVYRTRMVKGNLYQSSIEV
KGRGFTGDPASSKKVAEKNVSAMALEWLTGLSKPKRMA
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgttatacgctgccagatcatactccaaaggatctgtagaatcgatgttgggaagctgc
atatcaacagtagctacaccctctactgcgcatgttgcagtattatcatcttcttcttat
tcggcagtgctgtcatcaagtgtcaagtttgataaaatgcttcgagttatccgatttcag
gcgcatcggcggcttatacgccggtcggatattcgccatgacttgcgttactgtaggcag
ctagaaccttctacccagcctcatgattattcaccacaagcctttgattcatgcggttca
tacgtgatagaggctgggctcgagacgaaggaaagtaaaggacatggattgtattcgttt
cgcagttactttcctacaacgagagcctctttagctgactcaccttttcgaagattcaaa
aaagacaaggagattatggggagaagagacctcttaagtctaccgcatgtatacaacagg
agaaacattttcggcgatgttggtcccatcacgcaagtccgagaacttggatattattct
taccaggaatattcagatgacgaatcaggattttatgagaatgatgtcattcctcaatat
gttgatatagagagatggaggtggaggctgaaccagtttcttcgggatgggaagcagcaa
gagatggtttgcactgacaagaaagacaggcgggatcatgaccatattggggatctgatg
aagcaaatgggtcttcatatgaagttgtactccaaagtgctagttattagcaaagcgccg
ctgcccaattacaggcctgatctggatgagcgcaggccgcaacgattggtttcatttcca
agccaagttcaaaggaaggttgatgccttgctcaaagaatttgcatttcgcaaaaagcag
ggcttgatgtctgcgtctgaaggtggagacattgatgaggacacgtgtagtgatgtagtt
gatgctgggttggagactgccgatatgttaccaggcatggctaatgcagttcaagagctg
cagaataaacgcaacaggcaaattcgaaataagcaaagaggctggcaagagtctgaggag
ggacagaggatccttgagtttcggaagtccttacctgcatataaacagagggacgcttta
ctggcagctgttgcaaggaatcaggttgttgtagtttctggtgagacgggctgtgggaaa
acaactcagctgccccaatatattcttgaatcagaaatcgaagcggggcgaggagcaact
tgtagtgtaatatgtacacagcctcgtcgaatttcagccgtatcagtggcggaaagagtt
gctgcagaaaggggggaaaatattggtgaatctgttggttatcaagttcgactggagggt
atgcgcagccggcaaacacagttactcttttgcactacgggtattttattgcgaaggttg
atgaatgatcgggaattgaaaggggttagccatgtcgttgtagacgagattcacgagcga
ggcatgaatgaagactttttattgattgttttaaaagatcttcttcctcgacggcctgat
cttcgccttgtactgatgagtgcaactttgaatgcggatctattttcatcttatttcaat
agagctcctatggcacacataccaggcttcacctatcccgtgaagtcttatttcctagaa
gacattctggaaactactggttaccgccttactgccacaaaccagattgatgattatggt
caggataagcagtggaaaattaggaaacagtatgttacaacccggaaaaagaacccgttg
aacagtttggcggatgatgcactggctggcgaagattttcgccacctttctccccgaacc
caagcctccttagcagcatggagtccagacaacctgggtttcaatctgatagaaaatgtt
cttcttcatgttactcaacatgaacaggaaggtgcagttcttgtttttatgacaggttgg
gaggaaattactgctttaaaagaacaattacagagacatccagttttgggcaatcctgat
gtcgctcagatccttgcttgtcatggaactatggccactgctgaacagaaactcatcttt
gagcaccctcctcctggagtccgaaaaattgtgctggcaaccaacatggccgagaccagc
attacaattaatgatgtcgtatttgtgatagattgtggaaaagccaaagaaacctcttat
gatgctttaaataataccccgtgccttctgcctacgtggatttctcaggcatcggctagg
caaagacggggtagggctggcagggtgacgcccggaatttcttaccatctatatcccagg
gctgtctatgatgcttttgctgagtatcagcaacctgagttacttcgcactcctcttcat
tccctttgcttgcagatcaagagtctaaaacttggcagtgttagccaatttttatctagg
gctttgcagcctccagagccactggcagttcaaaattctgtggaattattgaaaaccatc
ggagctcttgatgagaaagaaaatcttactcgtcttggtaaacatctgtctctccttcca
gtggagcctaacattgggaagatgcttatcatgggatctattttcggctgcttggatcct
attcttactatagctgcaggtcttgctgtccgcgatcccttcatcatgccttctgagaag
aaagagttggccgatgaatctaggctaagttttgctggaggagatgcaagtgatcacatt
gcattggtgagagcttatgaaggatggcaagaagctatgacgtatggaactgcatatgat
tattgctggaagaattttttatcttttcagactctgcaggggatgacttcgttaagaaag
caattctctagcgtcctgagggacgccgggttcttggacaatgatatggaaaagttcaat
aagtatagtggtgaccgcgacttagtcaggggtgtaatttgctcgggtatgtatccggga
gtaatatcggtgtatcgacggacgagatccacaactttcaagacgattgaagatggccag
gttatgctgcaccagaattcagtgaatagcaaggatgtggattttctatatccatggctt
gttttcactgataaagtgaagacctccaatgtcatgattcgggacactactggtgtatca
gattctatgcttctcttatttggtggtcaggtaaatcaaggcggtgaaccgggccacttg
gtgatgaacaatgggttcatggagtttttcatggaaccaagtgttgctcttatgtatctg
aggttacgaaaagaactggatgatctaatttcgaggaagctagcaaatccagaaatgagt
atctatgaagaaggaaaagttcttatgagagccgtttttgaggttttagacgctgatcag
tgtgaaggttccttcacattcggacgtaaggtgaaggcttctaagccattgaccagatcg
tcggactcatcagatgtgaagggattgttacagacgctattacttcgggctggaaagaaa
cctcctgtgtacagaacacggatggtgaaaggaaatttgtaccagtcatctattgaagtg
aaaggcaggggatttactggggatcctgcttccagcaagaaggtcgcagagaagaatgta
agtgcaatggctctggaatggttgactggcctctcgaagccaaaacgcatggcctga
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