Physcomitrium patens (spreading earthmoss): 112295265
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Entry
112295265 CDS
T01041
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112295265
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppp01002
]
112295265
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112295265
03036 Chromosome and associated proteins [BR:
ppp03036
]
112295265
Peptidases and inhibitors [BR:
ppp01002
]
Metallo peptidases
Family M1
112295265
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112295265
Coactivators
SAGA/TFTC/STAGA complex
112295265
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112295265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
112295265
NCBI-ProteinID:
XP_024402345
UniProt:
A0A2K1J026
LinkDB
All DBs
Position
18:4456065..4469853
Genome browser
AA seq
1439 aa
AA seq
DB search
MAKQRKQKQKEQRPSDIGVIKSNEGVASSCCTILHQKLCVVIDLAAQRIYGHTELKVAVK
QGGKVGEAIGLHARDLHIEQVLVDGVEAQFEVLNQKHFSEVNVNDGPHPAPYTKSNLEAA
DDAYKKYSGDLYAESLPELLVYPPPSSTPTGPGQVPEMTLEVDAGLENGFSQSGFDTKSE
SANLVAPTNPQSEEVKILRVDYWVEKPPSGGHFEGHLFYTNNQLRRARCWFPCVDSTLQR
CSFDLEFTVRSEYVAVSNGKLLHQVYSNEGTHLKTYVYSLPIPTAASYVSLVVAPLVVLP
DRHHSNVSHLCMPGLEATLNSSINTFHTVFSLYEEYLGAPFPFGCYKQVFLPGDAVISTS
SVGASLATFSADLLADEHIIDQAISTRIKLAYALAQQWFGIFITPDSPADDWLLEGLAGM
LTDLFVKRFLGNNEARFRRYKANEAVCVVEVEGAPVLSPPAGLDMAMCGTEKLGVLGKIR
IWKATAVVQMLEKQMGPEPFRKVLQRIIMRAQDPNRKNRTLSTTEFRHFANKLGNLERPF
LKDFFPRWVESSGCPRLRMGFVYSKRRNMVELAVHRESTAMPKHVGVIGKVEAPESKLRL
SDMGWPGMMSIRLHELDGMYDHPSLPMAGDCYQLLELQCHSKLAGRRIQRPKKGAKGEAV
EDNVDATPAQSLESPLLWIRGDPELEYLAELNLRQPEPMWINQLEKDRDVIGQIQAVAAL
RAYPRTSFAVVNALNNCLIDPKVFCRVRIEAAAALASTASEGTSYMGLQNLLKYYKSRRF
DPDIGLPKPNDFHDFSEYFVLEAIPGAVAEVRGSDGKSPLEATDFILHILKHNDNSGNAY
SDVFWLASVIESIGSLEFGKQNLRTLARMLKQIDRFLQYDRLMPSYNGVVTISCIHTLAK
LAIRFSHALPTERVKQLLNQFKDRQKVQWQVRVAALKALLDIELQSKGLEAAVNLALQQV
HGDLSFGVQSKIMKHVVRMASITEKGKCRIGGVTIARLLALLESSKAFHNVMLRHSIFSF
LQVLAGRSASLYRSAEFLAKLAPNHVSQDKRFAKTKNLFKLRLRPTQSPAPPAPQSEPLK
LRLILPSSSKDNADRAESESSGGKRFSIKLKLSKSSSAHEGAGDDTSQALEVSTGAVPMD
HHVANSPLSVKEEVNLHEVIDSNLGFSQLESSRTQPLDNHPDESQILDTHNIHVGVEGDT
QDTTAQGNEEMKYRDVEGTEELVHEDTEGGGSPRRSYHANTYPESDSRASTEQEPPFDLY
GEDTQDGMGESRDDSRKALGVSRTMESDLQGYNSLSGMIDAENSTQDGGFEETESLRRVE
KQSGDKKERKHDKKDKKDRKDKKKKKKHDKHNDPEYLEKKRKRKEEREQRHRQEGHKSSK
EEKHRKEDSHEKVEEKPAFDAPMNDYSQSEGTKVENQGGNDIMKIKFKFKKPRTTTSDR
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagcggaaacagaagcagaaagagcagagaccctcagatataggggtcatc
aaatcgaatgaaggtgttgcttcatcttgctgcacgatacttcaccagaagctttgtgtg
gtcatcgacctagctgctcagcggatttatgggcatacagaactaaaggttgcggtaaag
caaggaggaaaagtaggtgaagcgatcgggttgcatgctcgagatctgcacattgaacag
gttcttgtcgacggtgttgaagctcaatttgaggttctgaaccaaaaacatttctctgag
gtgaacgttaatgatggacctcaccccgcaccttacactaagtcgaatctggaggcagct
gacgatgcgtataagaagtactcaggggatctttatgcggaatctctgcctgagcttctt
gtttatcctcctccttcctcgacaccaacagggccgggccaagttcctgaaatgacccta
gaggttgatgcgggactggagaacgggttctcacagtcagggtttgatactaagtccgag
agcgctaacttggtggctccaaccaatcctcagtcagaagaggtcaaaattttgcgtgtg
gattattgggtagagaagccaccctcaggaggtcactttgaagggcatcttttttacact
aataatcagttgaggcgagcacgttgctggtttccttgtgtagactcaaccctgcaacga
tgcagtttcgaccttgagtttacagtccggtcagagtatgttgcagttagcaatggcaaa
ttgcttcaccaggtgtacagcaacgagggaactcatctcaagacatatgtctacagcctt
ccgatcccaactgcggcatcctatgtgtctctggttgttgcacctctagtggttcttcca
gatcggcatcattcaaatgtgtctcatttgtgtatgccgggcctggaagcaacgttaaat
tcgtccatcaatacctttcacactgttttcagcttatatgaagaatacctgggagcccct
tttccatttggatgctataaacaagtatttctccctggtgatgccgtcatttcaacaagt
agcgttggagcatccttagcaacattcagtgcggatcttttggcagatgaacacattatt
gatcaggctataagcacacgtatcaagcttgcatacgccttggctcaacagtggtttggt
atcttcataacgcctgattctccagcggatgattggctcttggaaggtttggctggaatg
ctcacggatctttttgtcaagcgttttcttggaaacaatgaagcccgctttagacgttat
aaggcaaatgaagccgtctgcgtggtagaagttgagggagcacctgtcttaagccctcca
gctgggttggatatggccatgtgtggcaccgaaaagcttggtgtactggggaaaattagg
atctggaaagctactgcagttgtgcaaatgttggaaaagcaaatgggtccagagccattt
cgaaaggttttacaaagaataatcatgagagcacaagatcctaaccgcaagaatcgaact
ctaagcactactgagtttcgtcattttgcaaacaaattgggaaatctggaacgtccgttc
ttgaaggatttttttcctcgctgggttgaatcatcagggtgcccacgcttgaggatggga
tttgtatacagcaagaggcgtaacatggtagagcttgctgttcaccgggagtccactgct
atgcctaagcatgtaggagttatcggaaaagttgaagctccagagtcaaagctccgcctc
tcggacatggggtggcctggcatgatgagcataaggttgcatgagttagatggcatgtat
gaccatccaagtttacccatggctggtgattgctaccaacttttagaacttcagtgtcat
tccaagctggctggtcggcgcatacaacgtcctaagaaaggagcgaagggtgaagctgtt
gaggataatgtggatgctactccagctcaaagtttggagtccccacttttatggatacgc
ggggatccagaactagaatatttagctgagctgaatctacgtcaacctgagcctatgtgg
ataaatcaattggagaaagatagggatgttattggtcaaatacaagctgtagctgcatta
cgtgcctatcctcgcacgtccttcgctgtagtcaatgctcttaacaattgcctcattgat
cctaaggtcttctgtcgcgtgagaattgaagcagctgctgcactcgctagtaccgcatca
gagggaacaagctatatggggttacagaatcttttaaagtattataaaagtcgtcgcttt
gatcccgacataggtttacctaagccgaatgactttcacgatttctccgaatatttcgtt
ttggaggctattccaggagcggtagctgaagttcgtggtagtgacggcaagagcccgttg
gaagcaacagatttcattctacatattcttaagcataatgacaacagcgggaatgcatat
tctgatgtattctggctagcgtctgtcattgaatccataggttcactggagttcgggaag
cagaatttaaggacgttagcacggatgcttaagcagattgatcgcttcctgcaatatgac
agattgatgccaagttataatggagttgtgaccataagctgcatccatactctggctaag
cttgcgatacgcttttctcatgctttacctacggaacgagtgaaacaactgttgaatcaa
ttcaaagatcgtcaaaaggttcagtggcaagtccgagtggccgccttaaaggcgctattg
gatatagagttacaatctaaaggattagaagctgcagttaatcttgctttacaacaagtc
catggtgatttgtcgtttggagttcagagcaaaattatgaagcatgtggttcgtatggct
tctatcacggagaaaggcaaatgtagaattggaggagttactatagcacgcttgctggcc
ttgctagaaagcagtaaggccttccataacgttatgcttcggcatagcatcttctccttt
ttgcaggttcttgctggcaggtcggcatctttgtatcgatcagctgagttcctcgcgaaa
ttggcaccaaatcatgtatcccaagacaagaggtttgcaaagactaaaaacttgttcaaa
cttcggcttcggcctacacaatctccagcccctcctgctcctcagtcagagcccttgaag
cttcgacttatactgccaagttcttctaaagataatgctgatcgggcagagagtgaaagc
tctggaggcaaacgattctcgattaagttaaaactttcgaagtcttcctctgctcatgaa
ggtgcaggtgacgatacgagccaggctttggaagtgtccaccggagctgtgcctatggac
catcatgttgccaactctcctctctccgttaaagaggaagtaaatcttcatgaggttata
gattcaaatctaggtttcagtcagctcgagtcatccaggacgcagccattagacaatcat
ccagacgaatcgcaaattctcgacacgcataatattcacgttggggtggaaggcgacacg
caagatacaacggctcaaggcaatgaagaaatgaaatacagggatgtcgaaggtaccgaa
gaattagtacatgaggatactgaaggtggcggtagtcctagaaggtcctaccatgctaat
acatatccggagagtgattctcgggcaagtacggaacaagagcctcctttcgatctttat
ggggaggatactcaggatggcatgggagaatctagagatgattcgagaaaggcacttggt
gtatctcggactatggaatctgatcttcagggctataacagtttatcaggaatgatagat
gccgaaaatagtacacaggacggtggttttgaggaaacagaatccctaaggcgggtcgag
aagcagtccggggataagaaggaaagaaaacatgataaaaaggacaagaaggaccgcaaa
gacaagaagaagaaaaagaagcatgataagcacaatgatccagagtacctagagaagaaa
aggaagcggaaagaggaacgagagcagcgacaccgccaagaaggacataaatcttcgaaa
gaggaaaaacaccgaaaagaagatagtcatgaaaaagttgaggaaaagcctgcttttgat
gcgcctatgaatgattattcacagtcggaaggtactaaagttgagaatcaaggcggaaat
gatattatgaagattaagtttaagttcaagaagccaaggacgacgacttctgatagataa
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integrated database retrieval system
