Physcomitrium patens (spreading earthmoss): 112295408
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Entry
112295408 CDS
T01041
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppp03009
]
112295408
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
112295408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_EML
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR54
HAUS6_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
112295408
NCBI-ProteinID:
XP_073396760
LinkDB
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Position
18:complement(5968190..5972206)
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AA seq
579 aa
AA seq
DB search
MPVVYCAYCGQIRSQIAIVAYSVTISRGNRRISALFRALETASNDCRSFWWVASWCLGLS
FEEEEPEGRFFCRVYSVDEAVGGWSKLATVTEVVVVCSGADAGVTVWDLHSGLVLSHLRS
CASPRNALAPVGSHFLAAAQVPKPSGGAGGGAIYFWAWHKSQVAFKSYPVEPIGPLACTS
DGAYLAGGGASGRIYFWEVATGRLLRLWSGHYKNVSCLVFSDDDSLLISGADDGLVNVWP
LIRVLDMGEDGQGADGQVAAMYGWSDHTLPVTGLVSGSGGSSAIVVSCSLDHTCKIWSLA
LGTLLRSIVFPTALNAIVLDPGEYALYAGGADGRIFTTALNFGVPTTAGILADGNLGTDA
ALIGHSRAVTSLAFSMDGVSLVSGSEDCTARLWDTSSRQVLRTFAQSKGPISCLLVLPRS
LVQSHGSQPGRSVNRRAPTIPVAPLSKYVASDAVAHDANPWEGPLVVLPSSYPEDEDFEG
HSYSYVAMERQIKELEQRGSTAAMQMELERLRSELRRALNNGQQWQQLHQELYCFCVDEL
MGGNKERDEDEEKDGEKDKEKDKDKLKGRGKVVDTMRDK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtggtgtattgtgcatactgtggccaaattaggtcacagattgccatcgtcgcc
tactcggtgaccatttcccgtgggaatcggcgaatatctgctttgtttcgggcgctcgaa
actgcctcgaatgattgcagatcattttggtgggttgcatcatggtgcttgggtttaagt
tttgaagaagaagagccggaaggtcgattcttctgtcgagtatatagcgttgacgaggcc
gtgggtggatggagcaagctggctaccgtaacagaagtcgtggtggtgtgctcaggggcg
gatgcgggggttacggtgtgggatttgcactccggccttgtgttatcacacctccgctcc
tgcgcctcgccgcgcaatgcactcgctcccgttggatcccactttctggcggctgcccag
gtgcctaagccctcgggtggagctggaggtggcgccatctacttctgggcttggcacaag
agtcaagtagcatttaagagctatcccgtggagcctatcggtcctctggcgtgcaccagc
gatggagcttaccttgccggtggtggtgcgtctggtcgaatctatttctgggaggtggcg
accgggcggttgctgaggctttggtctggccactacaagaacgtcagctgcctagtgttc
tctgatgacgactcgttgctcatttctggagcggatgacggcctcgttaatgtctggcct
cttatcagggttctggatatgggagaggatggccaaggagcagacggacaagttgctgcg
atgtatgggtggtctgaccacaccttgccagttacaggacttgtttcgggctctggtggc
tctagtgctattgtcgtgtcctgctctttggatcacacatgcaagatctggagtcttgct
cttggaactcttctgaggtcaatcgttttcccgacagcattgaatgctattgtattagat
cctggtgaatatgcgttgtatgccggcggtgctgatggcaggattttcactaccgctcta
aattttggagtgcctaccacggctggaattttggccgatgggaaccttggcacggatgcc
gctcttattggtcacagtcgtgcagtcacatcgttggcctttagtatggatggagtgtcg
ctggtttctggatctgaggattgcacagcacgtctctgggacacatcaagtcgtcaagtt
ctgagaaccttcgcacaatctaaaggacccattagttgcttgctagtgttaccgcgatct
ttagtacaatctcatggttcacagccggggcgatctgtgaataggcgagctccaacaatt
ccagtggctccattaagcaagtatgttgcgtcagatgcggtggctcatgatgcgaaccct
tgggaaggaccccttgttgtgcttccttcttcgtatccagaagatgaagattttgaaggt
cattcatatagctacgttgccatggaacgccaaattaaagagctagagcaacgtggatct
acggcagctatgcaaatggaacttgaaagattaagatcggagttgcgccgggctttgaat
aatgggcagcaatggcaacaactacatcaggaattgtattgcttttgtgtagatgagtta
atgggtggtaataaggagagagatgaggatgaagagaaagacggagagaaagataaggaa
aaagataaagataagcttaaaggaagaggaaaggtagtcgatacgatgcgggacaagtaa
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