Physcomitrium patens (spreading earthmoss): 112295495
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Entry
112295495 CDS
T01041
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112295495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112295495
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112295495
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112295495
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112295495
NCBI-ProteinID:
XP_024402961
LinkDB
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Position
18:complement(3533759..3535298)
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AA seq
272 aa
AA seq
DB search
MSIVANGGSLRIREVWADNLEDEFELIRDIVDEYPYVAMDTEFPGVVVRPVGTFKNSAEY
HYQTLRANVDMLKLIQLGLTFSDENGVLPRCGSRDSCVWQFNFREFNLREDVYAHDSIEL
LKQSGIDFQQNEERGIDSQRFGELLMSSGIVLNENVHWITFHSGYDFGYLLKLLTCQNLP
TSEDEFFNLLRTYFPTLYDIKYLMKFCDNLHGGLNRLAETLDVERIGPCHQAGSDSLLTS
RTFRKLKDGFFNGSTEKYAGVLFGLGSDNLDS
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgttgcaaacggaggttccctccgcatccgggaggtatgggccgataacctg
gaggacgagtttgagctgatacgagacattgttgatgagtatccttacgttgcgatggac
acggagtttcccggagtggtggtgagacccgtcggcacgtttaagaacagtgcagagtat
cattatcaaactcttagggcgaatgtggacatgctcaaacttattcagttggggctcacg
ttttcagacgaaaacggggtcctaccgcggtgtggttctcgggattcgtgcgtgtggcaa
ttcaatttccgggagtttaacctcagagaagatgtgtatgcacatgactcaattgagctg
ctgaaacagagcggaattgatttccagcaaaacgaggagcgagggattgattcacaaaga
ttcggcgagcttttgatgtcttcaggaattgtgttgaatgaaaatgtgcattggatcact
ttccatagcggatacgattttggctacttgttgaagctacttacttgccagaatcttccg
acaagtgaggatgaattctttaacttgctgcggacgtattttcccaccctgtatgatatc
aagtacctgatgaagttttgcgacaatttgcatggcggtttgaatcgcctggctgagaca
ttggacgtggagcggattggtccttgccatcaggccgggtctgatagtttgctcacttct
cgcacttttcgcaagttgaaggatggtttctttaatggttccacagaaaaatatgctggt
gttttgttcggtttgggttcagacaacctcgactcttga
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