Physcomitrium patens (spreading earthmoss): 112296102
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Entry
112296102 CDS
T01041
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1
KO
K13103
tuftelin-interacting protein 11
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112296102
Spliceosome [BR:
ppp03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112296102
Other components
Complex C specific factors
112296102
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
DUF2170
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
112296102
NCBI-ProteinID:
XP_024404039
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Position
19:complement(3707109..3711133)
Genome browser
AA seq
860 aa
AA seq
DB search
MDEYQHYERFSMDNEYEDGIWIGGDFFARKPKAKKRQTKEEALYGVDDSDSDYEEPGKKR
RRGDNKKSDLTKPVSFVSTGTVMPSEEIEKEEKEEQVAPVGAGLGFGTAVLGSATGLGFG
AKGNIKQEENVEEEELLPTAFGRRIKEGAERRELEREKGKKAATKSRSLASGGTGSVPTF
EMFTRGIGSKLLEKMGYKGGGLGKNEQGIAQPIEAKLRPKNMGMGFNEFRETATGLPPPP
GMRQPDEDVVVEKPKSKEKLWMKKNKGKKKTELRTAAELLAEKDAQNGGIIHQTVLDMRG
PQPRLLTNLENLNAEQMPVEDSTPMPELQHNLRLIVDTTEAEVQTCNQRLQSERDTVLIL
NKDRERLEAVVSTQGKQIAVIEAVMTSLEQIRGQISMEGMTLESLASAFARIKHTYRDEY
KLFSVGIIALSLALPMMNALFRGWQPLLQPLHGIEAMAAWQELLQGNEAHDHAIFQDVDN
SPYIQLVLEVVFPHIRLATTNSWQPRDPEPLLRFLEAWDKVLPGGVKQNLLEGLVMPKLT
AAVDAWDPRLEEVPIHAWLHPWLPWLGPRMEPLYVPIRYKLNVALVNWHPGDSSALALLS
PWKTVFDPANWEMLIVRSIMPKLIQAMQEFVLNPAKQILDQFHWVMAWVSAVPLHHMINI
LEANFFPKWHQVLHHWLSASPDYDEVTAWFVGWKSLLPSELVANEKIRHHLSSALDLINQ
GMEATPSIPQATREKLTYLRVAEQRILELSQQAHSQQGHGATYVQPQKQHAALDMDENDS
GAEMTLKEVAEAFAQENDVQFIPKPGRMHEGLQVYSFGAVSVVIDNAKQSIFAQTGEGWK
QVHFGQILEMHRSRSGSRWK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtatcagcattatgagcggtttagcatggataatgagtacgaagatgggatc
tggattgggggtgacttctttgcccgcaaaccgaaagcaaagaagcgacagactaaggag
gaggcactgtatggggttgatgacagtgattctgattatgaagagccagggaagaagagg
cgtcggggggataacaagaagagtgacctaacaaaacccgtgagtttcgtatcgacgggt
acagttatgccgtcggaagagattgaaaaggaggagaaagaggagcaagtggctcctgtt
ggggccggattagggtttggaaccgctgttctgggatccgctactggactaggatttggc
gcgaaaggaaacattaaacaggaggaaaatgttgaagaggaggaattgctcccaacagca
tttgggaggaggatcaaagaaggagcagagcggagagaattagagagagaaaagggaaag
aaggctgccacgaagtcgaggtccttggcaagtggaggcacaggttctgttcctactttt
gaaatgttcactagaggaattgggtccaagttgctagaaaagatgggttacaaaggagga
ggtctggggaagaatgaacaaggtattgcgcaaccaattgaagccaaactacgacccaag
aacatgggtatgggattcaatgaatttagggaaacagcaaccggactgcctcctccccct
ggtatgcggcaaccagatgaagacgttgtggtggagaagccaaagtctaaagaaaagcta
tggatgaagaagaataaagggaagaagaagacagagctccgcactgcagcggagctgtta
gcagagaaagatgcacagaacggagggattattcaccagacagttctcgacatgcgaggt
cctcaaccgaggttgctaactaatctggagaatttgaatgctgagcagatgccagtagag
gacagtactccgatgcccgagttacaacataatcttcgtctaatcgtagatacgacagag
gcggaggttcaaacttgcaatcagaggttacaaagcgagagggacacggtgctgattctg
aataaagacagggagcgactggaagctgtcgtaagcactcaggggaagcagattgccgtc
atagaggctgtgatgacttctcttgaacagatccggggacaaatttctatggagggaatg
actttagaaagtttagccagcgcgtttgcaagaatcaaacacacataccgagatgagtac
aagttatttagcgtcggcatcatagccctttccttggctttgcctatgatgaatgccctt
tttagaggctggcaaccactccttcaacctctgcatggaatcgaggccatggctgcgtgg
caggagctcttacagggcaatgaagcacacgatcatgccatatttcaagatgttgacaat
tcgccttacatccagctagttcttgaggttgtatttcctcatatccgtttggccacgaca
aactcgtggcaacctcgagatccagagccactgctgagatttcttgaggcttgggataag
gtgcttcctggaggggttaaacaaaatcttcttgaaggacttgttatgccaaagctgact
gctgcggtggatgcgtgggatcctcggcttgaagaagttcccatccatgcatggctccat
ccttggttaccttggctaggtccacgaatggagccactctatgttcctattcgatacaag
ctaaatgttgcgttagttaattggcacccaggggattcctctgctctagctcttctttcc
ccttggaaaactgtttttgatcctgccaactgggagatgctaattgtgcgttcgataatg
cccaagcttatccaggcaatgcaggagtttgtgttgaatcctgccaaacagattttagat
cagtttcactgggtcatggcatgggtctctgccgttcctttgcaccatatgattaatatt
ttggaagcaaatttttttccaaagtggcaccaggttttacatcactggctaagcgcaagt
ccggattatgatgaggttactgcatggtttgtgggttggaagtccttgctgccgagtgaa
ctcgtggccaacgagaagatccggcaccatcttagttcagcacttgacttgataaaccaa
ggtatggaggcgacaccgagtataccacaggcaacacgggaaaaactgacatatcttcga
gttgcagaacagaggatacttgagctttctcagcaagcccattctcaacaaggtcatggt
gctacatacgtacaaccgcaaaagcagcatgcagctcttgatatggatgagaatgattct
ggagcagagatgactttaaaagaagttgctgaggctttcgcccaagaaaacgacgttcag
ttcattcctaaacctgggcgtatgcatgagggtcttcaagtatacagttttggggctgtg
agtgtggtcatagataatgctaagcagagtatatttgctcagactggtgaaggatggaag
caggtccactttggacaaatattggagatgcaccgcagtcgcagtggaagccggtggaag
taa
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