Paenibacillus polymyxa SQR-21: PPSQR21_000080
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Entry
PPSQR21_000080 CDS
T03178
Symbol
gyrA
Name
(GenBank) DNA gyrase, a subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_000080 (gyrA)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_000080 (gyrA)
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PPSQR21_000080 (gyrA)
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Topoisomerases
PPSQR21_000080 (gyrA)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPSQR21_000080 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
NTase_sub_bind
Motif
Other DBs
NCBI-ProteinID:
AHM63740
LinkDB
All DBs
Position
7757..10321
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AA seq
854 aa
AA seq
DB search
MADQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSP
DKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAA
MRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMA
TNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGS
VTMRAKTTIEEIGNKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGM
RIVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQVEV
IRRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFSLTLEQA
QAILDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISEELNELKGRFAD
DRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE
DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI
PIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI
IGTAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIVNTDLDILIVTAKGYGKR
TPAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEISTM
GRNTQGVRLINIRDDDSVATVCRANKNEEQDELLEDLLEDGGTDEELTLSSAEPTLGANA
EDTEGNDSESSGDE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcaaaataactcgcaaatcatcaatagggatatcggagtggaaatgcgcgaa
tcctttatggattatgccatgagtattattgttagccgtgccttgcctgatgtgcgggac
ggactgaagccggtacaccgtcgtattctgtacgcgatgtccgagctaggcatgtcgcca
gataagccttataaaaaatcggcaagaatcgtcggtgaagttatcggtaagtatcaccct
catggtgatacggctgtatatgatacgatggtgcggatggcgcaggatttttccttgcgt
tatatgttggtggatggacacggtaactttggctccgtggatggagatatggcagcagca
atgcgttacactgaagcacggctgtccaagattgccatggaaatgctccgtgatttgaac
aaagagaccgttgattttatgcctaactacgatggtgaagagaacgagcctgtcgtattg
cctgcacgttatcctaacttgctggttaacggtgtcggcgggattgcagttggtatggca
accaacattcctccgcataacttgggagaggttattgatggtgtacaagcactgatcgaa
aaccctgacattacgccgatggaacttatggactacattcaaggccctgatttcccaaca
gcaggttatatcttaggtcgctcaggcattcgtcaagcgtaccagactggccgcgggtct
gtgaccatgcgtgcaaagaccaccatagaggagattggcaataaagcacggattatcgtg
catgagctgccttaccaagtgaataaggctcgtctggtcgagaaaattgctgaactagta
cgtgacaagcgtattgagggcattacggatcttcgcgatgaatccgaccgtacgggtatg
cgtattgtgatcgagttgcgtagagatgtgaacccgaacgtcgttctgaataatttgttt
aaacatacggccatgcagtccaatttcggtatcaatatgcttgcgattgtaaacaatgag
ccgaagattttgaacctgaaagatgtcttgtattattatctcaagcatcaggttgaggtt
attcgtcgtcggacagaatttgatctgaaaaaagccgaagctagagcacacattctggaa
ggcttgcgtattgctcttgaccatctggacgaagttatttccttgattcgttcttcccaa
actgcagaagcagcccgtgaaggactgattgagcgtttctcactgactcttgagcaggct
caggctattctcgatatgcgtctgcaacgcttaaccggtttggaacgtgagaagatcgag
aacgaatataacgagctaattcaaaagataatggaataccgcgaaattttggcgaatgag
catctggtactcaacatcattagcgaagagctgaatgagttgaaaggacgcttcgccgat
gatcgtcgcactgaaattacagtgggtgaagagagtattctggatgaagatctcattccg
cgtgaagacgttattattactgtaacccatactggatatatcaaacgcctccctgttact
acgtatcgtagtcaaaaacgtggtggtcgtggtgtagtaggtatggataccaaagatgag
gacttcgtagagcatctgttcattacgaattcacatcatcatttgttattctttacggac
aagggcaaggtataccggattaaggcctatgagattccggatttaagccggacagctcgg
gggacaccgattattaacctgattcagattgagcagggtgagtcgatcaatgcagtaatt
ccaattgaggaatttgtggaggatagttatctattctttgcgacccagcatgggattatt
aagaaaacacctcttgatgactatgcgaatatccgcaaaggcggcctgattgccattaac
ttgcgtgaagatgacgccctgatcgaagtgaagctgactgatggacagcaggaaatgatt
atcggtacagcacaaggtatgtctatccgcttccctgaaagtgacgtacgatctatgggg
cgtagcgctacaggagttaaagggattagtcttgacgaaagcgatgctgtaatcggcatg
gatatcgtcaataccgacctggatattctgatcgtaacggccaagggttatggcaaacgt
acccctgctgtggattatcgtatccagagccgtggaggcaaggggatcaagacgattaac
gttaccgataaaaatggtccagtggtcggcctcaaggtagtaaaagccgaagaggatttg
atgattattacagctagtggcaccttgatccggactagcatgggggaaatctccacgatg
ggtcggaatacgcaaggggtaagattgattaatattcgcgatgatgattcggttgcaacg
gtttgtcgggcgaacaagaatgaggagcaagatgaactgcttgaggatttattagaggat
ggaggaactgatgaggagctaactctgtcatctgctgaaccaactcttggagcgaatgca
gaagatacggaaggtaacgattcagaatcttctggggacgaataa
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