Paenibacillus polymyxa SQR-21: PPSQR21_000420
Help
Entry
PPSQR21_000420 CDS
T03178
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPSQR21_000420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_000420 (mfd)
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSQR21_000420 (mfd)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PPSQR21_000420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHM63771
LinkDB
All DBs
Position
41625..45152
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFTKDADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHN
MFAAQKIADDLQEALSPDQVLLYPANELVAAEAAISSPETLSQRIDVLIRCAQGFRGVVV
VPFSGVRRLLPIPETWREARVELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRGG
IVDFYPMTTRWGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTVTPCKEVIASHQRMDQA
ADAAALLLEEQLDKMTDRQAKQHLKEEIHREIELLREHVYFDEIYKYISLLYPERKTLAD
YMPEDTILIIDEPARMLETARQLERDESEWNLHLLQNGKTIPQLELSDNSDNLLYNRRFQ
TLFLSIFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKAEMDRWRKAGTQVMMLASGDER
LDRMRRVLQDYGIDEPTMAIGNLQSGFEMPSIHLAVITEGEMFSQKQRKARKQGRHVDNA
ERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQSAPGFAFEKDSP
EQQEFEDMFPYDETRDQIRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETTKGVRQGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE
INALVPDAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNRNWSTSIDLG
VDAYLPGDYIYDSIQKIEIYKKVAAVSTFDEASELEDELVDRFGDLPEAVRHLLAVARLK
VYGRMYGIESIVQRDDNIVLKFHEGRQHAVQTAKLAEIGNRFERRVQFEQGTSMSARIKG
KGLNDPQLLELLEQFLSALKEAFTLKEELQNATTK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattcaggcttttacgaaggatgctgattatgcatccattgcggca
ggtatttcctcaggcatgaaggaacagctgatatcaggcttgtcaggctcttcaagacag
gtcctgatggccgcacttgctgaagatactggacgaccgttaatggtcatgacgcacaat
atgtttgccgctcaaaagatagcagatgatttgcaggaagcgctttctcctgatcaggtt
ttattgtatccagctaacgagttggtagctgctgaagcagccatatccagtccagagacg
ttatcccaacgaattgatgtattgatccgatgtgcccagggttttcgtggggttgttgtc
gtgccgttttctggagtccggcgtctactaccaatcccggaaacatggcgtgaggctcgt
gttgagctgaaagagggagaaacgattcagctggaagcatttttgctgcatatggtggag
atgggataccagcgtgtagagcgtgttgaatcccgcggggagatgagtgtacgcggggga
attgttgatttttatccaatgacaacccgatggggctatcgtgtggagttgtttgatgat
gaaattgactccatccgtatgtttgatccgcaagatcagcgttcggttgaaaaggtacag
gaagttactgtaacgccatgtaaggaagttattgcaagccaccagcgtatggatcaagct
gctgatgccgctgctctgttgttggaggaacagctggacaaaatgacagatcgtcaggct
aagcagcatctgaaagaggaaattcatcgtgaaattgagctgctgcgggagcatgtgtat
tttgacgaaatctataaatatatctccctgctgtatcctgaacgcaaaaccttggctgat
tatatgccggaagatacgattctaatcattgatgaaccagcacggatgctagaaacagcc
aggcagctagagcgggatgagtctgaatggaatttgcatttgcttcaaaacggtaaaact
ataccgcaactggagctatcggataactcggataatctgctgtataatcggagatttcaa
acgctgttcctgtcgatctttcttcgccaggttccgcatacacagccgcaaaatattttg
aatttcatctgccgtggcatgcaggatttccacggtcaaatgaatgtactcaaggcagag
atggatcgttggcgcaaggcaggcacacaggttatgatgctggcgagcggagatgaacgt
ctggatcggatgcggcgagtgcttcaagactacggtattgatgagccgacgatggcgatt
ggtaatctgcaaagcggttttgagatgccgtctattcatctggcggtgattaccgagggt
gagatgttctcccagaagcagcggaaagcacgtaagcaggggcgacatgtagacaatgca
gagcggattaagagctatagcgagctgaaggtgggcgattatgtcgtacaccaaaatcac
ggaatcgggaagtacatgggaatcggtacgctggaggttggcggtatccataaggattac
atgcatatcctctatgcgggcggagataagctgtctgtaccgattgaacaaattgatctg
attcagaagtatgtgggctccgaggacaaggaacccaagatttacaaactgggcggcaat
gagtggacacgtgttaaaagtaaggtgcgcagctcggttcaggacatcgcagatgacttg
atcaagctatatgcggaaagacagtcagcaccaggctttgcttttgaaaaggattcacca
gaacagcaggaatttgaggatatgttcccgtatgatgagacacgtgaccagattcgggct
attgaagaaattaaaaaggacatggagcagagtcgtccgatggatcgtttgctgtgcggt
gacgtaggctacggcaagactgaggtggctattcgtgctgcttttaagtctgctattgag
ggcaaacaagtggctgtgttggtaccgacgacgattttggcacaacagcactatgagact
ttccgtgagcgcttttccgggtatccgttcaatattcaggtattgagccgtttccgctcg
cgcaaagagcagaatgagacgaccaagggagttcgacaaggtacggtggatattgtcatt
ggtactcaccgtctactttcccaggatctggtgttcaaggatctggggctgcttattgtc
gatgaagagcaacgttttggcgtaacgcacaaagaaaagctgaaaaaactgaaaacgaat
gtagacgtgttgacactaacggctacacctattccccgtacgctgcatatgtccatgctg
ggtgtacgtgatttgtcagttattgagacgccaccagaaaaccgttttccagtgcagacc
tatgtagttgagcatagccagactctagttcgcgaggccattgaacgcgagatggcacgt
ggaggacaggtgtactacctgtataatcgcgtacaggggattcaggagatggctgccgag
atcaatgcacttgtcccagacgccaaggtgggcgtaggtcacggacagatgtctgaaacg
gaactggagaaaaccattttggatttcctggatggtgaatatgatgtactggttagcacg
agcattatcgaaaccggtgtggatatccccaatgtgaatacactcattgtgcatgatgct
gataaaatggggctttcccagctttatcagctgcgtgggcgtgtaggccgttccaatcgg
attgcctatgcttatttcacgtaccagcgagataaggtgcttacagaggtggcggagaag
cggcttcagtctatcaaagaatttacggagttgggttctgggttcaagattgcaatgcgt
gatttgtccatccgcggagcgggtaacttacttggcgccgagcagcacggattcatcgct
tccgttggttttgacctttactcgcaaatgctggctgaggaaatcaacaaacgtaaagtc
agtgtgcttggagaagaggatcaatccaaccggaattggagtacatcgattgatttgggt
gtcgatgcttacctgccgggagattatatttatgacagcatccagaagattgagatttat
aagaaggttgcagcggtcagtacctttgatgaggcttccgaactggaggacgaactggtc
gaccgatttggcgatctgccagaggctgttcgtcatttgcttgccgtggctcgccttaaa
gtatatggacgaatgtatggaatcgagtccattgtgcagcgggatgacaatatagtgctg
aaattccatgaaggtcgtcagcacgcggttcagacggccaaacttgccgagattggcaat
cgctttgaaagacgtgtacaatttgaacagggcacttctatgagcgcacgcataaagggc
aaaggtctaaatgatccacagttgctagaactgctggagcaatttttgagtgcattgaaa
gaagcattcacattgaaggaggaactgcaaaatgccacaactaaataa
DBGET
integrated database retrieval system
