Paenibacillus polymyxa SQR-21: PPSQR21_001330
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Entry
PPSQR21_001330 CDS
T03178
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPSQR21_001330 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppq03021
]
PPSQR21_001330 (rpoE)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_001330 (rpoE)
Transcription machinery [BR:
ppq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPSQR21_001330 (rpoE)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPSQR21_001330 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
DUF4777
Mnd1
BUD22
Motif
Other DBs
NCBI-ProteinID:
AHM63858
LinkDB
All DBs
Position
164878..165426
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AA seq
182 aa
AA seq
DB search
MSTPLNLKIDPEKVHETPMVDLAFMVLKAANTPYYYRDLMNEVAKLRGLSDEEINDVIAQ
LYTEINIDGRFACVGTNLWGLKRWYPVDKSEDALTGAKRPRIINDEDDDDEDDYHEEEET
YNSDDDFDADSEDEDGEDELFDGEDDDDSDDDVVIDDEDLSDEEDTDDENDDESIEDDDS
LR
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaccactcaacttgaagattgacccggagaaagtccatgagactccaatggtg
gatttggcatttatggtattgaaagcagccaatactccatattattaccgtgacctgatg
aatgaagtcgccaaattgcgcggcttgtccgacgaagaaattaatgacgttattgctcag
ctatatactgaaatcaacattgacgggcgttttgcctgtgtcggtacgaatctgtggggc
ttgaaacgttggtatccggtagataaatccgaagatgccctgacaggcgccaagcgtcct
cgtatcattaacgatgaagacgatgacgacgaagatgactatcatgaggaagaagaaaca
tacaactccgatgacgacttcgatgcagatagcgaagacgaggatggcgaagacgagctg
ttcgacggagaagatgacgatgatagtgacgatgacgtagttattgacgatgaagacctc
agtgatgaggaagatacagatgatgaaaatgacgatgagtcgatcgaagacgacgattca
cttcgttag
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