Paenibacillus polymyxa SQR-21: PPSQR21_008160
Help
Entry
PPSQR21_008160 CDS
T03178
Symbol
topA
Name
(GenBank) DNA topoisomerase
KO
K03169
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_008160 (topA)
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPSQR21_008160 (topA)
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Topoisomerases
PPSQR21_008160 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
DNA_ligase_ZBD
Lar_restr_allev
CoiA_N
Auto_anti-p27
DUF7351
DUF8259
Motif
Other DBs
NCBI-ProteinID:
AHM64476
LinkDB
All DBs
Position
905565..907700
Genome browser
AA seq
711 aa
AA seq
DB search
MKVLVLAEKPSVAREIARVMGSREKHKSYIEGPKYVVTWALGHLVGLAEPEDYDSKYANW
NLEDLPILPKNSKLKVLRESNHQFKAVQQLMKRQDIGELIVATDAAREGELLARWIIQMA
NWRKPFRRLWISSQTDKAIKAGFAKLLPGQQFDRLYESARCRAEADWMIGLNVTRALTVR
YNAQLSAGRVQTPTLGMIMEREKEITQFRSQEYDTLTADFGHFQATWRAENGDSRMFDRT
QAETLRRRLEGAKGTVVSVKKSEKSEPHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLY
EQHKLVTYPRTDSRYLTSDMVDSLKERLSSVAVGPYASLARPLLRNKLPITKRVVDDSKV
TDHHAIIPTEQTLLLNQLSPEERKLYDLIARRFISLFYPPARYDAVAVSVMVGQETFQVK
GTTIKDSGWRAVYDESHYELDEEETDDRESNGRGVILPEMRKGDSVQLQRCIVRAGRTMP
PKRYTEAALLAQMEKHGLGTPATRADLIEKLVSSDTIERQGNVMHPTGKGKQLIELAAPQ
LRTPELTAQWEAELERIARGQGQPEPFLNSIRAMAKELVSTVKNSSAEYKPHNITNSHCP
ECGTKLLEKKGKKGKFLVCPSADCGYRRSGEKRLSNRRCPQCHKKMEMKEGKAGLYVRCL
SCGITETLDKDKQRVNKREQQKLVKQFEKKESFGSSLGDLLKAAMEQKQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtattggtattggcagaaaaaccatccgtggccagagagattgcacgtgtgatg
ggcagccgtgagaagcataaaagttatatagaaggacctaagtatgtagtgacatgggct
ttgggtcatttggtcggattagcagagcctgaggattacgattctaagtatgcgaattgg
aacttggaggacttgcccattcttccgaagaactccaagttaaaggtattgcgggagagc
aatcatcagttcaaagctgtacagcagctgatgaaacgacaggacattggagaacttatc
gtggcaacagatgctgctcgtgaaggagaattgttggcgcgttggattatacaaatggca
aactggaggaagcctttccggcgtttatggatttcctcgcagacggataaggcaattaag
gcaggtttcgcgaaattattgcctggccagcagtttgatcgtttatatgaatcggctcgc
tgtagggctgaagcagactggatgattggtctcaatgtaacccgcgcgttaacggttcgt
tataacgcccagctttcggctggaagagtgcagacaccgacactggggatgattatggaa
cgtgagaaagagatcacccagtttcgttctcaagaatatgatacgttgacggcggatttt
ggtcattttcaggcaacatggcgtgcagaaaatggggattcacgtatgtttgaccgtact
caggcagagactttgcgccgcaggcttgagggggccaaaggtacagttgtgagtgttaaa
aaaagtgaaaaaagcgagcctcacccgcttgcgtatgacctaactgagctgcaaagagat
gctaaccagcgctacggcttctcggccaagcagacgtctaatgttcttcagcgtctatat
gagcagcataagctggtgacttatccacgtacagacagtcgttatcttacctccgatatg
gtggattcccttaaggaaaggctcagtagcgtagccgtgggtccgtatgcttctttagca
cgtccgctattgcgtaacaaattgccaatcacaaaacgagttgtagatgacagtaaagtc
acagatcaccatgcgattattcctactgagcagacgttattgcttaatcagttaagccca
gaggagcgtaagctgtatgatctgattgcacgccgttttatcagtctgttctacccacct
gcacgttatgatgctgtagctgtatcggtcatggtggggcaggaaacatttcaggtaaaa
ggtacaaccataaaagatagcggttggcgtgctgtgtatgacgaaagtcattatgaattg
gacgaggaagagacagatgatcgtgaaagtaatggacggggcgttattttgcctgaaatg
agaaaaggagactccgtccaattgcagcgttgtattgtacgtgctggaagaacgatgcca
ccgaagcgctatacagaagcagccctgctggctcagatggaaaagcatggcctgggtact
ccagccacccgtgcagatctgatcgagaaactcgtcagctcggatacgatagagcgccag
gggaacgtgatgcatcctactggcaaaggcaagcaactgatcgagctggcggctccacag
ctgcgaacgcccgaattgacggcacaatgggaagcggagttagaacggatcgcccgtggt
caaggacaacctgagccatttttgaattctatccgtgctatggcgaaagaattggtttct
actgtgaaaaatagcagcgcggagtacaagccacataacataacgaatagccattgtccg
gaatgtggtacaaagttgttggagaaaaaagggaagaaagggaagtttcttgtatgtcca
agtgcggattgcggttaccgtcgttcaggcgaaaaacgcttgtccaatcgacgttgtccg
cagtgtcataagaaaatggaaatgaaagagggcaaggcaggtttgtatgtaagatgctta
tcctgtggcattacggagacgctggataaggacaagcaacgggtaaacaagcgggaacag
caaaagctggtaaaacagtttgaaaagaaggaatcttttggctccagcttgggtgatttg
ctaaaagcagcaatggagcaaaagcagggcgaataa
DBGET
integrated database retrieval system
