Paenibacillus polymyxa SQR-21: PPSQR21_009640
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Entry
PPSQR21_009640 CDS
T03178
Name
(GenBank) polysaccharide lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
PPSQR21_009640
Enzymes [BR:
ppq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
PPSQR21_009640
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GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP_3
FG-GAP
Motif
Other DBs
NCBI-ProteinID:
AHM64624
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Position
1073598..1075463
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AA seq
621 aa
AA seq
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MNKKFRHTVLLCLGVMLCGVVTPMDSPISAASTRQMEKLNRGTVAVKVPEGILVSWRLLG
TEAGSVGFNLYRGSSKVNDAPITSRTNFLDKAGTTSSSYTVRAVVNGAEQAASPAVKVWN
NNYLDVPIQQPAGGTTPDHVNYTYNANDASVGDLDGDGEYEIVLKWDPSNSKDNSQSGYT
GNVFLDGYELDGTRKWRIDLGRNIRAGAHYTQFLVYDFDGDGKAEVVCKTADGTVDGTGV
KIGDASADHRNTSGYILKGPEFLTVFSGDTGKALSTIDYVPPRGTVSSWGDNYGNRVDRF
LAGVAYLDGVRPSIVMARGYYTRTVLVAYDWRNGNLSRRWTFDSNSSTNAGTAGQGNHSL
SVADVDGDDKDEIVYGSLVVDDNGAKLANTGMGHGDALHVGDLDPDRSGYEVFKVNEDKN
ATYGAAMYDPRNGNILWGVKTGKDTGRGMSADIDPRTKGNEQWAPGIGLRSAKGELITNT
MPSSINFGIWWDGDLLRELLDHTSSSAGKIDKWNYTNSTTSNLLTATGTSSNNGTKGTPS
LQADLFGDWREEVIWRKSDNSALRIYTTPYESEHRFYTLMHDPVYRLSVAWQNVAYNQPP
HTGFYLGEGMSKPQQPNIYTP
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaaatttcggcatactgtgttgctctgtctcggtgtcatgttgtgtggagtg
gtcactccaatggatagcccaatctcagctgcgtctacgaggcaaatggagaagctgaac
aggggaactgtcgcagtgaaggtaccagaggggatactggtgagctggcgtttattgggt
acggaagcgggttcggttggcttcaatctgtacagagggtcaagcaaggtgaatgatgcg
ccgattacatcgagaaccaactttctggacaaggcaggtacgacatcatcttcgtatacc
gttcgtgccgtggtcaatggagcagagcaggccgcttctccagcggtaaaggtatggaac
aacaactatctggacgttcccatccagcagcctgcaggaggcacaaccccggatcatgtg
aactacacgtacaatgccaatgatgccagtgtgggggatctcgatggggatggcgagtat
gagattgtgttgaaatgggacccttccaattctaaggataattcgcaatccggttatacg
ggaaatgtatttttggacggatatgagctggatggaacacgcaaatggcgaattgatctg
ggacggaatattcgggctggtgcacactatacgcaatttctcgtctatgattttgatgga
gatggtaaagcagaggttgtatgcaagacagcagacggcacggtagatggtacaggagta
aagattggcgacgcatcggctgatcatcgcaacacgagtggatatattttgaaaggtccc
gagtttctaactgtgttctcaggtgatacaggcaaggctcttagcacgattgactatgta
cctccgcgcggaacggtgtccagctggggagataactatggtaaccgtgtggatcgtttt
ctcgccggggttgcttatctggatggcgtaagacccagcatagtgatggcacgtggttac
tacacgcgcaccgttctagtcgcatatgattggcggaacggcaatctaagccgccgctgg
acctttgacagcaatagctccaccaacgccgggacggctggacaggggaatcacagtttg
agcgtggcagatgtggatggagatgataaggatgagatcgtgtatggctcgctggttgta
gacgataacggggcgaagctggctaacacggggatggggcacggcgatgcacttcatgta
ggcgatttggacccggaccgttcaggttatgaagtgttcaaggtgaacgaggacaaaaat
gccacttacggagccgccatgtatgatccgcgtaatggcaacattttatggggcgtaaaa
acaggcaaggataccggacgaggcatgtcggcagacattgatccgcgtaccaaaggaaac
gaacagtgggcaccgggcatcgggttacgttcagccaagggagagctcattaccaacacg
atgccgtcctccattaacttcggaatttggtgggatggggatctcctccgtgaactgctg
gatcatacctcctcaagcgctggtaaaatcgacaagtggaactatacgaactcgacgact
tccaacttgcttacggccacagggacgagttccaataacgggaccaaaggaacgccgtcg
ctgcaggctgatctgttcggtgactggcgggaggaagtcatttggcgcaaaagtgataat
tcggcgcttcgtatctatacaacaccttatgagtcagaacaccgattttacacgcttatg
catgatccggtgtaccgcctgagtgtggcctggcagaacgtagcctataatcagccaccg
cacaccggattttatttgggagaagggatgtccaagccccagcagccgaacatatacact
ccttga
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