Paenibacillus polymyxa SQR-21: PPSQR21_013820
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Entry
PPSQR21_013820 CDS
T03178
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase recq
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPSQR21_013820 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppq03019
]
PPSQR21_013820 (recQ)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_013820 (recQ)
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSQR21_013820 (recQ)
Messenger RNA biogenesis [BR:
ppq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPSQR21_013820 (recQ)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPSQR21_013820 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AHM65036
LinkDB
All DBs
Position
1616412..1618310
Genome browser
AA seq
632 aa
AA seq
DB search
MSVQAPTLERAQDLLQKFYGYPDFREGQKKIVASMLEGNDTLGIMPTGGGKSICYQIPAL
LHEGLTIVVSPLISLMKDQVDALTTMGIAAAYINSTLSGREVNDRIRAARNGDLKLLYVA
PERLELDWFRDEMAQLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDGLYERPIVAAFT
ATATPQVMDDIVRLLRLRSPETFVTGLGRPNLAFSVLRGEDKRSFLLNYAREHEGESGII
YAATRKDVDDLYQRLRDAGMAAGRYHAGMTDQERADSQEGFLYDDIRVIVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGDPSQCILLFGPQDIVTQKFLIEQNPQDEDR
KRNDYRKLQQMVDYCYTTRCLRSAQLEYFGEAEEHEACGICSSCTDERELVDMTIDAQKI
FSCIHRMRERYGVSMVASVLKGSRNKKVLQYGFDSLPTYGVMGNRTEKEIAEIINVLVSE
GYLMLSEGQYPVVRLQQLAAEVLRGQREVMQRVVRHATAFAGGAGSRGRKGRDTYPAAVN
ETVFEQLRLIRRDLAAQEHVPSYIIFNDATLREMSVASPQSEADMLRIKGVGEVKFRKYG
KPFLDFFQNQGNTGGMVSEDEIFVDDVYEDFE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacaagcaccaacattggaacgggcgcaggacttgctgcaaaaattttatggc
tatcccgatttccgggagggacaaaagaaaattgtggccagtatgctggaaggcaacgat
acgctgggcatcatgccgacaggtggcggaaaatcgatatgctaccagattcccgcgttg
ttgcatgaggggctgaccattgttgtgtcaccactgatctcgttaatgaaagaccaggtg
gatgcgctgaccacgatggggattgcagctgcctacattaatagcacgttgagcggtcga
gaagtcaatgaccgtatacgcgccgcacggaacggagatttgaagttgctgtatgtcgcc
cctgaaagactggaactggattggttccgtgatgagatggctcagttaccgatttcctgc
gttgcggtagatgaggctcactgcgtatcccagtggggtcatgattttcgtaccagctat
ctggctgtggctccattcgtggacgggctatatgaacgtccaatcgtagctgcgtttacg
gcgacggctacaccacaggttatggatgacatcgtacgcctgcttcgtttgcgctcaccg
gaaacgttcgttacggggcttggaaggccgaatttggcgttcagtgtgctgcgaggggag
gacaaacgcagctttttactgaattatgcccgtgaacatgagggtgaatcgggcattatt
tatgcggcgacacgtaaggacgtggatgatttatatcaacgcctgcgcgacgctggcatg
gcagccggacgttatcatgcaggaatgacagatcaggaacgtgcagatagccaggaaggg
tttctgtacgacgatatccgtgtcattgtcgcaaccaatgccttcggtatggggatagat
aaatcaaacgtacgctatgtcattcattacaatatgcctaaaaatatggaggcgtacgta
caagaagcgggacgcgcaggacgtgatggcgatccgagtcaatgtattttgctgttcgga
ccgcaagatattgtgacccagaagttcctgattgagcaaaatccacaggatgaagaccgc
aagcgcaacgactaccgtaagctccagcagatggttgactattgttacacaactcgctgc
ctacgttcagcacagctggagtatttcggagaagcggaggagcatgaagcctgcggcata
tgcagttcatgtactgacgagcgggaactggtcgatatgactatagatgcgcaaaagatt
ttttcgtgcattcatcgtatgcgggagaggtatggggtttcgatggtggcctcagtgttg
aaaggctcgcgtaacaaaaaagtgctgcagtatggttttgacagcctgccaacctatggc
gtgatgggcaaccgaacggagaaagaaattgctgaaattatcaatgttcttgtttcggaa
ggctatctgatgctgtccgaggggcaatatccagtcgtccgcttgcaacagcttgctgct
gaagtgctgagagggcagcgcgaagttatgcagcgtgtggtgcggcatgccactgcattt
gctggtggagcaggttcacgcggacgaaagggacgcgatacctaccctgctgcggtcaac
gaaactgtgtttgagcaattgcgcttaatccgtcgcgatctggccgctcaggagcatgta
ccgtcttatatcatcttcaatgatgccacgctgcgagagatgagcgtagcgagtccgcaa
tccgaagcagacatgctgcggatcaagggtgttggtgaagtgaagttccgcaagtatggc
aagccgtttcttgatttctttcaaaatcaggggaataccggcggaatggtgagcgaggac
gagatttttgtagacgatgtgtacgaggattttgaatag
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