Paenibacillus polymyxa SQR-21: PPSQR21_016590
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Entry
PPSQR21_016590 CDS
T03178
Symbol
dnaE
Name
(GenBank) DNA polymerase iii, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03030
DNA replication
ppq03430
Mismatch repair
ppq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSQR21_016590 (dnaE)
03430 Mismatch repair
PPSQR21_016590 (dnaE)
03440 Homologous recombination
PPSQR21_016590 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_016590 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_016590 (dnaE)
Enzymes [BR:
ppq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPSQR21_016590 (dnaE)
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPSQR21_016590 (dnaE)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPSQR21_016590 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF6282
HROB
Motif
Other DBs
NCBI-ProteinID:
AHM65311
LinkDB
All DBs
Position
1881497..1885162
Genome browser
AA seq
1221 aa
AA seq
DB search
MSSFVHLHVHSEYSLLDGAARTAELVKQASAYGMEALALTDHGVMYGAIPFYRACVENGI
KPIIGCEAYMTAGSRKERGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHLEGFHYKPRI
DMDALAAHHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGEDFYLELQDHGLS
EQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRIPTR
QLYLKSQEDMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEYRPLPEDMTSSSYLRS
LCMQGLERRYGGDPVWEQPEEREKLDQRLNYELNTIDSMGFSDYFLIVWDFIAFAHKHKI
ATGPGRGSSAGSLVAYVLNITNVDPIKYNLLFERFLNPERISMPDIDIDFSDERRDEVID
YVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGINIRHALE
ITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPLQEGSEGVP
LTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWVAEQHGETPDFSRVPDDDPHTYDLLG
KGDTGGVFQLESAGIRRVLKDLKPSVFEDIISVLALYRPGPMGFIPNFIQAKHGQIEVSY
PHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDLERGHFV
EGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVQFMASMLT
AVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQQGDIRFGLAAIKNVGTQAMES
ILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLAMLDETVDAA
AKWRKERDDLQIDMFGFVEMPNWDIEYPNVPPFSTSQQLELERELLGLYLSGHPLDDFES
LLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKAMAFIELEDQIERCEVVLFP
EVWKRSQQWIEKGALLALRAKMQQQDEHFKLLADEAAPLAEDALARLLQRRRTGARSSAA
AGTSVPAAGSPGGRAPRMSPLPSAAAPSASPQQKAARPVAAPSQRGGEAAHGEQVPSPRG
SEASARQRVFVKITRQAEEDASLLVSLKALLQEHPGAVPTVLFYESNQRLLALSDAYSIK
PSPQLFDRMESMLGEGTVKVK
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatttgtgcatttgcatgttcacagcgagtacagcctgctggacggcgcggct
cgtaccgcggaattggtcaaacaggcatcagcttatggaatggaggcgctggctcttaca
gatcatggggttatgtacggtgccattcctttttatagagcatgtgtagagaacggcatt
aagccgattatcgggtgtgaggcttatatgacggcaggatcgcgcaaggagcgtggcagc
cggaaggatcagcccatatatcatttaattttgctcgccaaaaataaaacaggctatcaa
aatttgatgaagttgtgctccattggccatttggagggttttcactataagccgcgcatc
gatatggatgctttggctgcccatcatgaaggcatcatatgcttgagcgcttgcttgggc
ggtgaagtgccgcagcatttgctgcatggtcgggaagccgaagcacgacgtgcggccgaa
cgataccgtagcatttttggcgaagatttttatctggagcttcaggatcatggtctgtcg
gagcaaaaacgcgtaaatcctcaattgatcgcattggcgaaggaactggatattccgcta
gtggcgacgaatgacgtgcattacttaaccgagccggatgctgatgtccaggacgttctg
atttgtatcgggacagggaagacagttgacgatgaggagcgcttgcgtataccaacacgt
cagttgtatctgaaaagtcaagaggacatggctcgtttatttccacatgtagcagaagcc
atcgctaatacggtgcgtattgctgaaaaatgcgagctggagctggaattcggccaatcg
attttgcctgaatatcgcccgctgccagaggacatgacgtcttcgtcctatttgcgtagt
ctgtgcatgcaagggctagagcgtcgctacggaggcgatcctgtatgggagcagccggag
gagcgggaaaaactggaccagcggctaaactacgaattaaatacgatcgacagtatgggc
ttcagcgattatttcttgattgtatgggattttattgcttttgctcataagcataagatt
gcaaccggtccgggacggggttcctccgccggtagtttggtcgcctatgtgcttaatatc
acgaatgtcgatccgataaaatacaatctgctctttgaacggtttctgaaccctgaacgg
atcagcatgccagatatagatattgattttagcgatgaacgccgggacgaggttatcgac
tatgtagtacagaagtacggaaatgagcatgttgcgcaaattattacctttgggacatta
gcggcaagagccgcagtccgtgacgtcggccgtgtattgaacgtgccgtatggcgaggtg
gacaaggcggccaagttgatcccggcgcagctcggcattaatatccggcatgcgctggag
atcacccccgagctgaaggctctgtatgaaacgaagcccaagacacgtgaactgctggat
atggcgatcaaagtagaaggaatgcctcgccatgcttcgacacatgcggcgggtgttgtt
atctcgcggactccattgaccgatgcggttccgctgcaagaggggagcgaaggggttcct
ttaacgcagtactcaatggaaaatctggagcgcatcggtttattgaaaatggattttctt
ggactacgtacgctctccattattgaacggtgcatgcgctgggttgcggagcagcatgga
gaaacacctgactttagccgtgttcccgacgatgacccgcatacctatgacttgctgggc
aaaggagatacaggaggcgtgttccagctggagtcggccggtatacgccgggtactcaag
gatttgaaaccgagtgttttcgaggatatcatttctgtcctggctttgtatcgtccgggc
ccgatgggttttattcccaactttatacaggctaagcacggacagattgaggtttcttat
ccgcatcctgatcttgaaccgatcttaaaggatacgtacggtattattgtgtatcaggaa
caaatcatgcagattgcatcgcgcatggctggcttttccttgggagaggccgatctgctg
cgccgcgcggtgtctaagaaaaaacgcgaggtgctggatctggagcgtggtcattttgtc
gaaggcagtattaaacaggggtacacagaggaggaagccggcagggtttacgatatgatc
gtccgttttgctgactacggttttccgcgtgcccatgcagctgcttatggtgtgctagca
ttccagacggcttatcttaaggcccattatccagtacaattcatggcttccatgctgacg
gccgtcatgggaagtcatcgaaaagtggctgaatatgtcgtcgaatgccgtcgtatggat
atcgcagtgttgccgcctgatgtgaatgagagtggggtgctgtttaccccattacagcag
ggggatatccgctttggactggctgccattaaaaatgtcggcacacaagcaatggaaagc
attcttgctgttcgtaaggaacgccctttcgacagcttgctcgatttttgtcgacgcgtt
gatttgagggtgtgtaataagagagtgattgaatcgctcattcaggcaggggcatttgat
tcattgacaggccatcgggcacagttgcttgccatgctggatgaaacggtggatgcagct
gccaaatggcgcaaggaacgtgacgatttgcaaattgatatgtttggctttgtggaaatg
cctaattgggatattgaataccccaatgtacctccatttagtaccagccagcaattagag
ctggaacgcgaactgctgggactgtatttgtctgggcatccgctagatgattttgagtcg
ctgctggaaagcagccaagcggatcgtctgatggagctgagcgacgtgccagatgaaaca
gttattgtaaccgcaggcatggtggtgtcactcaagacgattacgaccaagcagggaaag
gccatggccttcattgagctggaggatcagattgagcgctgtgaggttgtgctgtttcct
gaggtatggaagcgaagccagcagtggattgaaaagggtgccttgcttgcactacgtgcc
aagatgcagcagcaggacgagcacttcaagctccttgcggatgaggcagccccgctggcg
gaagacgcgttggcaagacttcttcagcgccggcgtaccggcgcacgttcgtccgcagca
gctggaacatccgtgccagctgctggcagtccgggcgggagagcgccgcgtatgtcgccc
ttgccttcagcagccgctccatcagcgtcgccgcagcagaaggcggctcgtcccgtagcg
gccccctcacaacgcggaggcgaagcggctcacggtgagcaggtgccttccccgcgcggc
tcggaagcgtccgcccgtcagcgggtgtttgtcaaaatcacccgccaggccgaggaggac
gccagcttgctggtcagcctcaaggcattgctacaggagcatcccggtgctgtgcctacc
gtacttttttacgagagcaaccagcgtctgctggcgttgagtgatgcttacagcattaag
ccttctcctcagctttttgatcgaatggagtcgatgctgggtgaaggcaccgtgaaagtc
aaatga
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integrated database retrieval system
