Paenibacillus polymyxa SQR-21: PPSQR21_016840
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Entry
PPSQR21_016840 CDS
T03178
Symbol
polA
Name
(GenBank) DNA polymerase i
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03030
DNA replication
ppq03410
Base excision repair
ppq03420
Nucleotide excision repair
ppq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSQR21_016840 (polA)
03410 Base excision repair
PPSQR21_016840 (polA)
03420 Nucleotide excision repair
PPSQR21_016840 (polA)
03440 Homologous recombination
PPSQR21_016840 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_016840 (polA)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_016840 (polA)
Enzymes [BR:
ppq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPSQR21_016840 (polA)
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPSQR21_016840 (polA)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PPSQR21_016840 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPSQR21_016840 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
DNA_pol_A_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AHM65336
LinkDB
All DBs
Position
1909875..1912529
Genome browser
AA seq
884 aa
AA seq
DB search
MDKLMLIDGNSIIYRAFFAMPPLTNSSGQQTNAVYGFTTMLLRLLEEHKPTHILVAFDAG
KITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTLSKTA
DKAGFNVLVVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQIIDLKG
LMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTDELKGKMKERVETHADDARMSKD
LATIYRDVTLDKQLEDVVFSGLQAETAGPALAKLEFKSLLERLSFSGEVGSAGVGVEEAV
ADVTVLDEQRISELVEVLNNVDVLHVETHGDNPHHAEIVCLIFAATGRQFFMTLEVLQSD
AATPIREWLADPERKKRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSG
LAAKYGLSSIRPDDEVFGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQAELEKTEMHK
LFHELEMPLSRILADMEKQGILVNVEELRALGKEFEAQITTLVGEIYSIAGVEFNLNSPK
QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL
KEISEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAA
DYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGI
VYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRY
LPEINASNFNQRSFAERTAMNTPIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDEL
VFEVPPEEMETMKELVPATMEAALKLAVPLKAEVSYGSNWYEAK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggataaactcatgcttatagatggtaacagtatcatataccgggcgttttttgctatg
ccgccgttgacgaattcaagcggacagcagacgaatgcggtgtacggatttacgacaatg
ttattgcggcttttggaggagcacaaaccaacgcatattttggttgcgtttgatgctggt
aaaattacgtttcgccacaaagggtacgaggattacaaaggtggacgggagaaaacgccg
ccggagctgtcccagcaatttccgctgctgaaagagctattgaccgccttcggcattgcc
caatttgaactggatggctatgaggcagacgatattataggcaccctgtccaaaacagcg
gacaaagcgggttttaatgtgctggttgtgaccggcgacaaggatatgcttcaattggct
tcagaccatgtcacagtcggcttgacccgcaaaggggttaccgaggtggaaacgtatgga
cctgagcagattcaggaacgttacggcttaaagccgctgcaaatcatagaccttaagggc
ctaatgggcgatacgtcggataacattcctggtattccgggcgtgggtgagaaaacagcg
ctcaagctgctgcatcaatatggttcagttgaagaggtgctggcgcatacggatgagctg
aagggtaaaatgaaagaacgcgtggagactcatgctgacgatgcgcgaatgagcaaggat
ttggcgaccatttatcgggatgtaacgttggacaagcaactggaagatgtggttttcagc
gggctacaggcagagacggctggaccagctttggcgaagctggagttcaagtccctgctg
gagcgtttatccttttcgggcgaggtcggcagtgctggagtcggcgtagaggaagccgta
gcagacgtgactgtgctggatgaacagcggatcagcgaattggtagaagtgctgaataac
gtagatgtgctgcatgttgagacgcatggtgataatccgcatcatgctgagattgtatgc
ttgatatttgccgcaacagggcgtcagttttttatgacactggaagttctacaaagtgat
gcagctacccctattcgggagtggcttgccgaccctgaacgcaaaaaacgcggtcatgat
ctgcatcgtacggacttggctttacactggcatggaattgagtttgctggagctgagttt
gatgtgcagctggccggatacttgctagatccgacagacgccaatcagacattgagtggg
ctggcagccaagtatggcttgtcatcaattcgtccagacgacgaagtgtttggtaaagga
gctaaatataaagttcctgacgtggatgtactatccgatcatgtggcgcgtaaggcagcg
gtgatcgaagcgttggtacctgtgcagcaggcggagctggaaaaaacggaaatgcacaag
ctgttccatgagcttgagatgccgttatcccgcattctggcggatatggagaagcagggt
attttggtgaatgtagaggaactgcgcgctttgggaaaagaatttgaagcccagattaca
acgttggtgggtgagatctacagcattgcaggggtagagttcaatcttaattcgcctaag
cagttgggtgagattttgtttgataagctgggtctgcccgttattaaaaagacaaaaacc
gggtactcgaccgatgcagaggtgctggaaaagcttgcgccatatcatgatattgtgcaa
aacattttgcaatatcgcaccattgccaaacttcaatcgacgtatgtcgaaggattgctt
aaagaaatttcggagaagacaggtaaagtgcacacgtatttccggcagacggttgcagca
accggacgcttgagcagtcaatttccgaatttgcaaaacattccgatccgtctcgaagaa
ggacgcaaaattcgcaaagtatttgtgccatcggagcccggctggtcgattttggcggca
gactattcacaaatcgagctgcgggtgctggctgatatttcggatgatgagcgtttgaaa
gaggcttttgtccacgatatggatatccataccaagaccgcatccgatgtgttcggtgta
ccggcagaggctgtagactccgatatgcgccgttctgcaaaggcggtcaactttgggatt
gtttacgggattagtgactatggtctgtcgcaaaatttgaatattacgcggaaggaagcg
gctcgctttatcgaccagtattttgacgtgttccagggtgttcgccgttacatggatgat
attgtgaaggatgcgaagagggatggatacgtaaaaacgttgttggaacgcagacgatat
ttgccagagataaacgccagcaatttcaaccagcgttcgttcgccgagcgtacagcgatg
aatacgccgattcaaggtaccgcagccgatattatcaagctggcgatggtgcagatggac
gcagcgctgcgtgagcgcaatcttcgcagccgtatgctgttacaagtacatgatgagctt
gtattcgaggttccgcctgaggaaatggaaacgatgaaagagcttgttcccgctaccatg
gaagctgcattaaagctggctgtgccgcttaaagcggaagtaagctatggcagcaattgg
tatgaggccaagtaa
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