Paenibacillus polymyxa SQR-21: PPSQR21_019560
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Entry
PPSQR21_019560 CDS
T03178
Name
(GenBank) DNA topoisomerase i
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_019560
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_019560
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPSQR21_019560
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Topoisomerases
PPSQR21_019560
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPSQR21_019560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
MACPF_b-prism
Zn_ribbon_RPB9
Toprim_3
Pput2613-deam
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AHM65604
LinkDB
All DBs
Position
2178670..2180772
Genome browser
AA seq
700 aa
AA seq
DB search
MADSLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EINEFVPEEYWTITAKLAIKDSTFEAKFHKLRGEKKELSSEADVQEVLEAIGKSSYKVRD
VKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIATSAQEEAKEVIIQKYGEDFVPESPRQYSKKSANAQDAHEAIRPTSALRDPETV
KPFMSRDQFRLYKLIWERFMASQMASAIMDTLSVDIEAGETIFRAAGSKVRFPGFMKVYV
EGNDDGKTEEDKLLPPLQPGDKLKKESVEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
EGDWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEVSDVICDKCGSQMVYKLGRFGKFLAC
SAFPDCRNTKPIVKDIGMNCPTCGEGHVVERRSKKGRVFYGCDRYPECDFVSWDKPSIKP
CPSCSGLMVEKRTKQGTKLNCTVCDHSEMLEESDESVETS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcactcgtcatcgtggaatcgccttccaaggcgaagacgatcggcaaatac
ttaggcagcaaatatatcgtcaaggcttccatgggtcatatcagggatttacctaagagc
cagatcggcgtagaggtcgaaaatgattttaatcccaaatatattaccattcgaggtaaa
ggctccattctaaaagagttaaaggatgcccgaaaaaaagtaaaaaaagtatatctggcg
gctgacccggatcgcgaaggtgaggctattgcttggcatctggcgcatgcgctggaactg
gacgatacggcggattgtcgtgtggtgtttaatgaaattacgaagcaggccgtcaaagat
gcttttaaaaccccacgcaagatcaatatggatttggtcaatgcgcagcaggcacgacgg
atattggatcgacttgtcggctacaaaattagtccattgctctggaaaaaggtaaaaaag
ggtctgtcagctgggcgtgtacagtcggttgcagtgaaaattattttggaccgggaaaac
gagatcaatgagtttgtaccggaagaatactggacgataacagctaaactagctattaag
gacagcacttttgaagcgaaattccataagctacgcggcgaaaagaaagagctctctagc
gaagcggatgtacaagaagtgttagaagctatcggaaaatcgtcttacaaggtgcgcgat
gtgaaagagaaggagcgtttacgcaatccgtctcctccattcacaacaagttccttgcag
caagaggcggctcgaaagctcaacttccgggcatctaaaaccatgtctgtagcgcagcag
ctgtatgaaggtgtggatttaggtaaagaagggactgtgggtctgattacgtatatgcgt
acggattccacacggatcgctacttcggctcaagaggaagcgaaagaggtcattattcaa
aaatatggcgaagattttgtgcctgaaagtcctcgtcagtattcaaaaaaatcggctaat
gctcaggatgcgcatgaagcgattcgtccaacctccgccttgcgtgatccggaaaccgtt
aagccttttatgagtagagaccagttccgattgtacaaactgatatgggaacgttttatg
gcgagtcagatggcttccgctattatggatactttgtccgttgatattgaagcaggcgag
acgatattccgggcagccggttcgaaggttcgctttccaggcttcatgaaagtgtatgtg
gaggggaatgacgacggtaaaaccgaagaagataagctgttgccgccacttcagccgggc
gataagctgaaaaaggaatcggttgaaccaaagcagcattttacacaaccgcctcctcgc
tatacggaagcacgactggtgaagacactggaggaattgggtataggacgcccgagcacg
tatgcaccgaccctggaaaccattcagaagcgcggttacgtcgctattgaggaaaagaaa
ttcttcccaaccgagctgggagagttggtcattgagcagatggaagaattttttccagag
attctgaatgtagaatttactgcgaatatggaaggtgatcttgaccacgtcgaagagggc
gaaggtgattgggtcaaggtgttgagcgacttctacgagtcattcgaaaagcgcctggaa
gtggctgaagaagaaatgaaagaaattgaaatcaaggatgaagtatccgacgtcatctgt
gacaagtgtggcagtcaaatggtatataagctaggccgctttggtaaatttctggcctgc
tctgccttcccggattgccgtaacaccaagccaattgtcaaggatatcgggatgaattgt
cctacatgcggtgagggacatgtcgtcgaacgacgaagtaaaaaaggacgtgtcttttac
ggatgtgaccgctacccagaatgtgattttgtatcctgggataaaccgtccattaagcct
tgtccaagttgcagtggcctaatggtcgaaaaacgtactaaacaggggacgaagctcaac
tgcaccgtctgcgatcacagcgaaatgctggaagagagcgatgagagtgtagagacttct
taa
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