Paenibacillus polymyxa SQR-21: PPSQR21_020990
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Entry
PPSQR21_020990 CDS
T03178
Name
(GenBank) hypothetical protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppq03019
]
PPSQR21_020990
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PPSQR21_020990
Messenger RNA biogenesis [BR:
ppq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PPSQR21_020990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
GGDEF_2
HA2_C
Motif
Other DBs
NCBI-ProteinID:
AHM65747
LinkDB
All DBs
Position
2327806..2329065
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AA seq
419 aa
AA seq
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MGTHPRLGHMLLRAAALGLAPTASRLAVLLQERDPFRAHGGTDLRPRLDALREAAHARST
HSLLGAADDTVIRRIVQESRQLLATLPTTAALQDEPDGSAACGLLLAFAYPDRIAQVRGD
GRFLLSGGRGARLRQVEWMSRSPYLVAAEVDDEGADGAIQLAAPIELQELIQHCSDLLLE
EANVYWDSSASAVRARKVLRLGSLILKEASYERPPAEEIAAALMQGVRERGLKLLSWNRQ
TLQLQARLIFMHFSAPEDWPDSSESALLDSLESWLLPFAVGAKNLADLQRLDGSELLLGR
LNWEQRQQLEQEAPTHIRVASGSRIPVDYSQPEAPSLAVRLQELFGMKDTPRIGRGRVPI
VLHLLSPAQRPVQVTSDLSSFWSEAYFEVKKDLKGRYPKHYWPDDPLEAVATNRAKPKR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
ttgggtacgcacccgcgcttaggacacatgctgctgcgcgcagcagctctcggcctggcc
ccaaccgccagccgtctggcggtgctgctgcaagagcgggacccgttccgtgctcatggc
ggaacggatttgcgcccgcggctggatgccttgcgcgaggcggctcacgcccgcagcacg
cacagcctgctgggagcggcagacgatacggtgattcgtcgtatcgtgcaggagagtcgg
cagctgctagccacgctgccgaccacagccgcattgcaggacgagcctgacggctccgcg
gcctgcgggctactgctggcctttgcgtatccggatcggatcgcgcaggtccgaggggat
ggccgctttttgcttagcggcggccggggggcgcgactccgacaagtggagtggatgtcg
cgttcaccctatctcgtcgccgccgaagtggacgacgagggagcagatggtgccattcag
ttggcggcaccgattgaactgcaagagctgatccagcattgcagcgatttgctgctggaa
gaagccaacgtatactgggatagctccgcttcagccgtgagagctcgcaaggtacttcgg
ctgggctcgcttatcctaaaggaagcgtcctatgagcgacctccggcagaggaaatcgct
gctgccttaatgcagggtgtccgggaacgtggtctcaaactgctgtcctggaatcggcaa
acccttcagttgcaggcgcgtctgatttttatgcacttctctgcgcccgaggattggcct
gacagctcggaatccgcgctgctggattcactggaatcgtggctgctgccatttgcagtt
ggtgccaaaaatttagctgatctgcaacgactggacggtagtgaattgctgcttggcaga
ttgaattgggaacagcgacagcagctcgaacaggaagcaccgacgcatatacgtgtagcc
agtggttctcgtattcctgtcgattattcgcaacctgaggcaccttcactggccgtgaga
ctacaagaactgttcggcatgaaggatacgccccgtattggacgcggacgagttccgatt
gtgctgcacctcctgtcaccagcccagcgacctgtgcaagtgacatccgacctgtccagc
ttctggagcgaggcatattttgaagtcaaaaaggacctaaaaggaagataccccaagcat
tattggccagatgatccactagaagctgtggcgactaatagagcaaagcccaagcgataa
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