Paenibacillus polymyxa SQR-21: PPSQR21_029140
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Entry
PPSQR21_029140 CDS
T03178
Name
(GenBank) DNA-binding protein hu-alpha (histone)
KO
K03530
DNA-binding protein HU-beta
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_029140
03036 Chromosome and associated proteins [BR:
ppq03036
]
PPSQR21_029140
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_029140
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PPSQR21_029140
Chromosome and associated proteins [BR:
ppq03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PPSQR21_029140
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PPSQR21_029140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-DNA_bdg
DUF2267
SIS_2
DUF937
Motif
Other DBs
NCBI-ProteinID:
AHM66556
LinkDB
All DBs
Position
complement(3346743..3347018)
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AA seq
91 aa
AA seq
DB search
MLNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARK
GRNPQTGEEIEIPASKIPAFKPGKALKDGIK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgttgaataaaacggatttgatcaatcaggtttctgagagcactgaattgtccaaaaag
gacgtaaccaaagcaatcgatgcagtatttgaagcgatcgctggagcactgcaaaacgga
gacaaggtacaactggtaggtttcgggaactttgaggttcgtgaacgttccgcacgtaaa
ggacgtaacccgcaaacaggagaagaaatcgaaatccctgcgagcaaaattccggcattc
aaaccgggtaaagcgctcaaagacggaattaaataa
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