Paenibacillus polymyxa SQR-21: PPSQR21_029250
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Entry
PPSQR21_029250 CDS
T03178
Symbol
rpsA
Name
(GenBank) RNA binding s1 domain-containing protein
KO
K02945
small subunit ribosomal protein S1
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
PPSQR21_029250 (rpsA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
ppq03011
]
PPSQR21_029250 (rpsA)
Ribosome [BR:
ppq03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
PPSQR21_029250 (rpsA)
Bacteria
PPSQR21_029250 (rpsA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
S1_RRP5
Spt6_S1
OB_RRP5_4th
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AHM66567
LinkDB
All DBs
Position
complement(3357807..3359033)
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AA seq
408 aa
AA seq
DB search
MSEEIKNQEAAEAANQDELDQIVSLKKGDTVKGTIVKLEDNQAVVSIGYKYDGVIPIREL
SSGLDNAEEAVQVGQEVEARIISIDDGKEKLVLSKRAIDSENAWEKLEQLFESKEVFEVV
VNDVVKGGIVVDVGLRGFIPASMVERHFVEDFSDYKGRTLRVVVKELDRENNKVILSQKD
VLEAEFEANKLKVMAELKEGQEIVGTVQRLTQFGAFVDVGGVDGLVHVSEIAWTHVDKPS
DAVSEGDQVKVKVLKVDPEKGKISLSMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGA
FVEIAPGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILEMNPSEKRVSLSIKETEEAP
EAAPKAERAPRASRAPREELNNPNVSLNNSGLSITLGERFGDKLNKFK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagaaattaaaaatcaagaagctgctgaagcggcaaatcaagacgagctcgat
caaatcgtttccctgaaaaaaggtgacaccgttaagggtacaattgtgaaattggaagat
aaccaagcggtagtaagcattggatataaatacgatggagttattccaattcgcgaattg
tcttctggtctggacaatgcagaagaagcagtgcaagtaggccaagaagttgaagctaga
attatcagcatcgacgacggcaaggaaaaacttgttctgtccaaacgtgcaatcgacagt
gaaaatgcttgggaaaagttggagcaactgttcgaaagcaaagaagtatttgaagttgtt
gtgaatgatgttgttaaaggcggcatcgtagtagacgtgggactgcgcggattcatccct
gcatccatggtagaacgccattttgttgaagatttcagtgattacaaaggccgcacattg
cgtgttgttgtaaaagaactggatcgtgaaaacaacaaagtgatcctttcccaaaaagac
gttctggaagcagaatttgaagctaacaagcttaaagtaatggctgagctgaaagaagga
caagaaatcgttggtacggttcaacgtcttactcagtttggtgctttcgtagatgttggc
ggagtagatggtctggttcacgtatctgaaattgcttggactcatgttgataagccttct
gatgctgtttccgaaggagatcaagtgaaagtgaaagtcttgaaagtagatcctgaaaaa
ggaaaaatcagcctgagcatgaaagctgcacagcctggtccttgggaatcggctgctgga
caattcaataacaatgacatcgtaactggtgttgttaaacgtctggttaacttcggtgca
ttcgttgaaatcgctcctggtgtggaaggtttggttcatatttctcaaatttcccacaaa
cacattggaactccacaagaagttctggaagaaggacaagaagttaaagttaaaattctt
gaaatgaatccttccgaaaaacgtgttagcctgagcattaaagaaactgaggaagctcct
gaagctgctccaaaagcagaaagagcaccacgtgcatctcgcgcacctcgtgaggaactg
aataatcctaacgtttccctcaacaactccggactgagcattacgcttggcgagcgtttt
ggcgataagctgaacaaatttaaatga
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