Paenibacillus polymyxa SQR-21: PPSQR21_030820
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Entry
PPSQR21_030820 CDS
T03178
Symbol
priA
Name
(GenBank) primosomal protein n
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPSQR21_030820 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_030820 (priA)
Enzymes [BR:
ppq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSQR21_030820 (priA)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPSQR21_030820 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
PriA_C
Helicase_C
Zn_ribbon_PriA
Cas3-like_C_2
PIF1
Zn_ribbon_6
Sigma70_r4
Flavi_DEAD
AAA_30
ADDB_N
AAA_19
FeoC
nSTAND_NTPase5
SLFN-g3_helicase
TIR
DAP3
TrwB_AAD_bind
T2SSE
Zn_ribbon_ISL3
Motif
Other DBs
NCBI-ProteinID:
AHM66724
LinkDB
All DBs
Position
complement(3518594..3521170)
Genome browser
AA seq
858 aa
AA seq
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METGNLVAKVIVDVPAKDTDRTFDYLIPDSMRPWIEPGSRVAVPFGKRTVQAFVISVVPA
EEPPKYRMRAIQELLDLVPPLSPDLVELGKWMSERYACNQIMALQVMIPTALKGKAERYI
SIAEQQESTNPQRSMLSNQGDEIEWALLTDDGMSDPAERQIVSFIQNKEQVPLQQLSRRF
PEEAEVIKSLLRRGVLQESQVIKDKLGKKTMKAVDLAISIDEASMALEQFSAKAQRQREV
LAFLLERSEFLPLPLKEVMTSLGVSAATVKALEDKGYVLQEDVEVFRDPYRGRHFKPTDP
LPLTAEQQSVYERIVRQLDMREQGAYLLHGVTGSGKTEIYLQTIQRCIEQNRQAIVLVPE
ISLTPQMVERFKGRFGDQVAVMHSRLSGGERYDEWRKIREGRVKVAIGARSAVFAPFREL
GLIIMDEEHETSYKQEETPKYHARDVAIRRAHQHGAVVILGSATPSLESYYAARSQSNDE
FAPLLLEMPTRALGNTLPEVHIMDMREELRAGNRSMFSRALHNGIAERLERKEQTVLLLN
RRGHSTFVMCRSCGYVAGCPDCDISLTYHQRSNNLRCHYCGYSETVPQTCPECGSEHIRY
FGTGTQRVEEELAKLFPGIRVVRMDVDTTTEKNAHEKLLKQFRDKKADVLLGTQMVAKGL
DFPDVTLVGVITADSALNLPDFRAAEKTFQLLTQVAGRAGRHQLPGEVFVQSYTPEHYSV
VHASRHDYSSFVREELKHRRNLHYPPYCRLILVTFSHEQLPVLVRLAENYSATLQGRARQ
RGWFGNMDRLTSNVLDILGPVASPISRIKNRYRFQCMIKWRGNIDAIGLAQQVADEMAES
AQAQKLLISLDVDPQMLM
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggagacaggcaatttagttgccaaggtcattgtcgatgtacctgccaaggatacagat
cgtaccttcgattatctgatcccagattccatgagaccttggattgagccaggtagtcgg
gtagctgtgccatttggcaaacggacggtgcaggcttttgttatctcggtagttccagct
gaagagccgccgaaatacaggatgagggcgattcaggagttgctggatctggtaccgccc
ttatctcccgatttggttgaactgggcaaatggatgagcgagcgttatgcttgtaatcaa
attatggcactgcaagtgatgattcctaccgcgcttaagggcaaggcggaacgttatatc
tccattgccgaacagcaagagtctacgaatccacagcggtctatgctgtctaatcagggg
gatgagatcgaatgggcccttctgactgacgacggtatgagcgacccggcggagcgtcag
attgtcagcttcattcagaataaggagcaagtcccgttgcagcaacttagtagacgtttc
cccgaggaggcggaggttattaaatcgctgttacgccgcggagtgcttcaggaaagccag
gttattaaagacaagcttggcaaaaagacgatgaaagctgttgatctggctatcagcata
gatgaagcatccatggcactggagcaattttctgccaaggcgcagcgtcagcgggaggta
cttgcttttttgctggaacgtagcgagtttctgcctctgccgctgaaggaagttatgacc
tcgttaggtgtatcagctgcgacggttaaggcactggaagataagggctatgtgttacag
gaagatgttgaagtgttccgcgatccctaccggggcagacacttcaagcctacagaccca
ctccctctaacggcagagcagcagtcggtgtatgaacggattgttcgtcagctggacatg
cgtgagcaaggagcttatttgctgcatggagtcacaggaagcggtaagacggaaatctat
ctgcagaccattcagcgctgtatcgagcagaatcgccaggcgattgtgctcgtacccgaa
atatcattaactccacaaatggtcgaacgtttcaaaggacgttttggcgaccaggtcgca
gtgatgcatagtagattgtccgggggagaacggtacgatgagtggcgcaaaatacgcgaa
ggccgtgtaaaagtagcgattggcgctcgttcagcggtatttgccccttttcgtgagcta
gggctcattattatggatgaggagcacgaaacgtcctataagcaggaagagacgcccaaa
taccatgcgcgtgatgtagccattcgcagagcgcaccagcacggggctgtcgttattctc
ggttcagctacaccgtcactagaaagctattatgctgcccgctcccaaagcaatgacgag
tttgcgccgctactgcttgaaatgccgacccgagcattggggaacacgttacccgaagtc
catatcatggacatgcgtgaggaactacgggccggcaaccgctccatgttcagccgcgcg
ttgcataatggaatcgcagagcgattagagcgtaaggagcagacggtattactgttgaac
cggcgtggtcactccacgttcgtcatgtgccggagctgcggctatgtggcgggatgtccg
gattgtgatatttcgcttacctatcatcagcggtcgaacaatttacgttgtcattattgc
ggctattccgagactgtacctcagacttgcccggaatgcggtagtgagcatattcgttac
ttcggtacaggtactcagcgagtggaagaagagttggctaagctattccctggtatacgt
gttgtccgaatggatgtcgatacaacgactgaaaaaaacgctcatgaaaagctgcttaag
caatttcgtgataaaaaagcagacgtactactgggtactcaaatggtagccaaagggctg
gactttcccgatgtaacgctggtaggtgtcattactgcggattctgctcttaatttaccg
gattttcgggctgcggaaaagacctttcagctgttaacacaagtagccgggcgtgctgga
aggcatcaattgccgggggaagtattcgtacaatcctacactccagagcattattcggtg
gttcatgcaagccgtcatgattattcatcttttgtgagggaagagttgaaacaccgccgt
aatttgcactacccgccatattgccgacttattttggtgaccttttctcatgaacagctt
ccagtgctagtccgattggctgaaaattattcagcgacactacagggacgagccagacaa
cggggctggttcgggaatatggaccggcttacatcgaatgtattggacattttggggcca
gtagcttcacccatttcgagaatcaagaatagataccgatttcaatgtatgataaaatgg
cgtggaaatatcgacgcgattggtttggctcagcaagtggctgatgaaatggccgaatct
gcacaggcacaaaagttgctgattagtctggatgttgatccgcagatgctaatgtag
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