Paenibacillus polymyxa SQR-21: PPSQR21_033520
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Entry
PPSQR21_033520 CDS
T03178
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--d-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq00470
D-Amino acid metabolism
ppq00550
Peptidoglycan biosynthesis
ppq01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PPSQR21_033520 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PPSQR21_033520 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppq01011
]
PPSQR21_033520 (murD)
Enzymes [BR:
ppq01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
PPSQR21_033520 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppq01011
]
Precursor biosynthesis
Amino acid ligase
PPSQR21_033520 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Pyr_redox_3
2-Hacid_dh_C
XdhC_C
Pyr_redox
DUF7966
Phage-A118_gp45
Motif
Other DBs
NCBI-ProteinID:
AHM66990
LinkDB
All DBs
Position
complement(3815230..3816651)
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AA seq
473 aa
AA seq
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MNHPDAYRDQEVVIIGLAKSGVQVAKVLHQAGAKLTVNDKKDREQCPEASELEALGISVL
CGGHPEGLIHPGVKLVVKNPGIPYAAPPVQKAVELGIEVVTEVEVAYHLCKAPIIGITGS
NGKTTTTTWVGKLLEASGMNPIVAGNIGTPLCEAAVDAKSDEWMVVELSSFQLKGTKDFK
PAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVVNWDDPVCRELVPYIQAKL
LPFSMTERLQEGVFADPPYIPDVTDDIERNIVYRDGNGVLQPIIGVTDIGLPGRFNVENA
LAACAIAIAAGAKPAKLVEPLSSFRGVEHRLEYVLEHGGVAYYNNSKATNSKATMMALSS
FKQPIVLIAGGLDRGSDYAELVPSLQEGVKAVVLLGETRHKLADRARQAGIEHVKVVDNG
EDAATTLVEAVNKAAEFAETGDVVLLSPACASWDMFQSYEERGRIFKEAAHKL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatccagacgcataccgagatcaggaagtcgtcattatcggtctggccaaaagc
ggcgtacaagtggccaaggtgctacatcaggccggggcaaagctcacagtcaatgataaa
aaagatagggaacaatgtcccgaagcttctgaattagaggctttgggaatttccgtttta
tgcgggggtcacccggaaggactgattcatcctggagtgaaactggttgtcaaaaatcca
ggaattccttacgcggcccctcccgtacagaaagctgtcgagctcggcattgaggtcgtg
accgaggttgaggtcgcctaccatctatgtaaagctccgattatcggaattactggctcc
aacggaaagacgaccacgaccacttgggtgggcaagttgttggaggcatccggcatgaat
ccgatcgtggctggtaatatcggtacgccgttatgcgaggcggctgtggacgccaagtcg
gacgagtggatggttgtggagctgagcagctttcagttaaaaggaacaaaggatttcaag
cccgctgtagcctgcttgctcaatgtagctgagacccatttggactaccacggaggcatg
gaggactatgttgcatccaaggcacgtctatttgccaatcaaacagcgtcggataccgcg
gtggtgaactgggatgatcccgtctgccgggagcttgtgccctatattcaagcgaagctg
cttcctttctcaatgacggaacgtttgcaggagggggtgttcgctgacccgccatacata
ccggatgtaacggatgatattgaaagaaacatcgtataccgtgatggaaatggggtactg
caacccattataggcgtgaccgatattgggcttccgggtcgttttaacgtagaaaatgct
ctagctgcttgcgctatcgccatagccgcaggcgcaaaaccagcaaaattggtggaacca
ttaagttcttttcgcggtgtagaacatcggcttgaatatgttttagaacacggtggagta
gcttattacaacaattccaaagcaaccaattccaaagcgacaatgatggccttatcttcc
tttaagcaacccatcgtactcattgctggaggattggaccgtggctctgattatgcggag
cttgtaccgtccttgcaggaaggtgtgaaagccgttgttctcttgggtgagacacggcat
aagctggcagatcgggcccgtcaggctggaatagagcatgtcaaggtcgtcgataatggg
gaggatgccgccactacgctcgtggaggctgttaacaaggcagctgaatttgctgagacg
ggagatgtggtattactctcacccgcctgtgcaagttgggatatgttccaatcctatgaa
gagcgtggacgtatttttaaagaggcggcgcataaattgtaa
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