Paenibacillus polymyxa SQR-21: PPSQR21_034130
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Entry
PPSQR21_034130 CDS
T03178
Symbol
sbcC
Name
(GenBank) smc domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_034130 (sbcC)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPSQR21_034130 (sbcC)
Archaeal homologous recombinant proteins
PPSQR21_034130 (sbcC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
SMC_N
AAA_29
AAA_21
ABC_tran
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
AHM67051
LinkDB
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Position
complement(3884465..3887854)
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AA seq
1129 aa
AA seq
DB search
MKPILLKLAGLQSYRESQEIRFDDLTETGLFGIFGPTGSGKSTLLDAITLAMYGKVERAV
NGTQGIMNHAEDTLSVAFTFELMSAQGPRRYRVERRFKRAGGVSVNNTLSRFIAYTEDGE
EVLADKVQDVTRCVEEYIGLKMDDFTRAVVLPQGKFAEFLSLKGSERRQMLQRLFHLEKY
GDQLAQKLSRRVKDNDIALKSLEAEQQGLGDASAEALELVKLRLQEAMDHAEASRRELER
VSREAEVLNKTRELVMELSQRVNELEDMARQEPGIALLERKLRQASAAEALLPALTDWKE
AVAEAEKRQKNAEQMAVQAASAAETALVSVQADEQARQALSAEEPKLLLRIDQLEQALQL
ERDTEVLRTEQERLAAELMRSEQTLAEHAAGLAKEQELQTRGVKRQQELQQELKQNEVRA
DERRMLQEAMQRLQQLETAHEQWREAEQEYLAQEKRLALADERLKLMEQETQETETRRSV
LAAQAAEGIEALLALDAEITADVSALVTEEEQLRHELRAEELARLAQHLATELREGEPCA
VCGSLHHPAPAAVAAHGADSAAPDELHRLRLGLQELRLTLRQQLHEQRSLLTQPAAADSG
AAATGEPFTPAAAVPRGVAVWAERCAALERTAAELAARAHTLPAEAQALREADAAGQQWR
IRAAAEQEAAVAALAQARSKREACTTRSEGLRAEWAAQLPDVGPDQAAERYRAMQERDRR
AEELRTRLETSVTFLEEKAARVQQIQQSIIEEDKIIIARRTGLQSKDDLLREKQEQLRKW
VGEGQAASLLEEATSRLLGLKNGAEAAARRRTEAEERKQQAVHASLIARQASDSAEERRQ
TAASRWGMCLEASSFATEAEVMECCLGPEEATRYEREVNFHREREKELSSRLKHVEEQLN
GATITEEQWETTTARLRDCRARDEEALQNRAKAERDLEDLQRRHVRWMELESNRLHLRSE
AEKMSKLQSVFRGNAFVEYIAEEQLMQVSQSASRRLRFLTKQRYALEVDSSGGFVISDDA
NGGVKRPVSTLSGGETFLTSLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDPELLDTVI
TSLEKLHHDQLSVGVISHVPELRARLPRKLVVLPAEQAGGGSRVVMETF
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatccttctgaaactggcgggattgcaaagctaccgggagtcgcaggaaatt
cgctttgacgatttgaccgaaacggggctgttcggaatttttggtccaacgggtagtggt
aaatcaacattgctggatgctattacgttggccatgtacggtaaagtggagcgggcggtg
aatggtacacaaggcatcatgaaccatgccgaggatacgctgtctgtagcatttacattt
gaattaatgtcagctcaaggacctcgccgttaccgtgtagaacgacgtttcaaacgtgca
ggaggcgtatcggttaataatacgcttagccgttttattgcatatacagaagacggcgag
gaagtacttgctgacaaagtacaggatgtgacacgctgtgtggaggagtacatcggcctg
aaaatggacgattttacgcgcgctgtcgtattgccgcaggggaagtttgcggaattttta
tccttaaagggcagtgaacgtagacagatgcttcagcgtttgttccatctggagaagtac
ggagatcaacttgctcagaagctgagccgtcgtgtgaaggataacgacatcgccttgaag
tcgttggaagcggagcagcaagggctgggggatgcgagtgctgaagcgcttgagcttgta
aagctgcgcctccaagaagcgatggaccatgcagaggcctcgcgccgcgagctagagcgt
gtttcacgggaagcggaggtgctgaacaaaacacgggaactggtcatggagcttagccaa
agagtgaatgagttggaggatatggcaagacaggaaccaggcattgctttgctggagcgc
aagctgcgacaagcctctgcagcggaggcgttgctgcctgcactgacagattggaaggaa
gccgttgccgaagcagaaaaacggcaaaagaatgctgaacagatggcagtccaggctgcc
tccgcagcggagacagcgcttgtatctgtgcaagcagatgagcaggcgcgacaagcactt
agtgccgaagaaccaaagctattgcttcgaatcgatcaactggagcaggcgcttcaactg
gaacgtgatacggaagtgctgcggaccgaacaagaacgtttggcggctgaactgatgcgt
agcgaacaaacccttgcagagcatgctgcaggtctcgcaaaggaacaagagttacagaca
cgaggtgtaaagcggcagcaggagcttcagcaggagttgaagcaaaatgaagtgcgggca
gatgagcggcgtatgttgcaagaggctatgcagcggctacaacagctggagacagcgcat
gagcaatggcgtgaagctgaacaggagtatttagctcaggagaaacggcttgcactagca
gacgaacgtctaaagctaatggagcaggagacacaggagaccgagacacgacgttctgtc
cttgctgcacaggcggctgaaggcatcgaggcgttgctggcgctggatgcggaaattaca
gccgatgtgtcggcactggttaccgaggaggagcagctgcgtcacgagctccgtgccgag
gagctagcgcgtctcgcgcaacatctcgctaccgagctgcgcgaaggagagccatgcgca
gtgtgtggctctctgcatcaccccgcgcctgccgctgttgcggcccatggcgcggattcc
gctgcgccggatgagctgcaccgcctgcggctcggcttacaggagctgcgtctcacactg
cgccagcagttgcacgagcagcgcagcctgctgacgcagcccgccgccgcagacagcggc
gctgccgccacgggcgagccttttacgcctgcggctgctgtgcctcgtggtgtcgccgta
tgggcggagcgctgtgcagcgctggagcgtacagcggctgagctggcagcgcgtgcgcat
acgctgcctgccgaggcacaggcactgcgtgaggcggacgccgccggacagcagtggcgt
atccgtgcagccgccgagcaggaagcggcggttgcagccctggcgcaggcgcggagcaag
cgcgaggcatgtaccacgcgcagcgaggggctgcgcgccgaatgggcagcgcagctgccg
gatgtcggccccgaccaagctgcggagcgttatcgcgccatgcaggagcgcgaccggcgt
gcggaggagctgcgaacccgactggagacgagcgtgaccttcctcgaagaaaaggcagcg
cgtgtacagcagatacagcaaagcatcatcgaggaggacaaaatcattattgcccgtcgt
acagggctgcaaagtaaagatgatttgctgcgtgaaaagcaagaacagctccgaaagtgg
gttggagaaggccaagcagcctcattgctggaagaagcgacctcacgcttgttgggactg
aaaaacggagccgaagccgctgcacgccgccgtaccgaagcggaagaacgcaagcagcag
gctgttcatgcttcactgatagcgcggcaggcctccgactcggcagaagaaagacggcag
acggcagcatcccgttggggcatgtgtctggaagcttcctcttttgctacggaagcagag
gtcatggaatgctgcttgggaccggaagaagccacacgctatgagcgtgaagtgaatttc
caccgagaacgggagaaggagctgtcttcccgcttaaaacatgtcgaagagcagttgaat
ggagcaacaataacagaggaacagtgggaaacgaccactgcgaggctgcgtgattgccgt
gcacgcgacgaagaggcgcttcagaatcgcgccaaggccgaacgtgatttagaggacttg
cagcgtcggcacgtccgctggatggagctggagtccaatcgtttacatctgcgtagcgag
gcggaaaaaatgtccaagctccagtctgtttttcgaggcaatgctttcgttgaatatatt
gccgaagagcagctcatgcaggtcagccaatccgcttcacgccgcctgcgttttctgact
aagcagcgttatgcgctagaagtagattccagcggtggttttgtcattagtgatgatgcc
aacggtggggtcaaacgtccggtatcgaccttgtccggtggcgaaacgttcctgacctct
ttgtcgcttgcgcttgcgctgtcggctcaaattcaattgcggggccaataccctctacaa
tttttctttctagatgaaggatttggaacgttggaccccgaactgcttgacacagtgatt
acctcgctagaaaagctgcatcacgatcaattatctgttggtgtgattagccatgtgcct
gaattgcgggcccggctcccacgcaagctggttgttcttcccgcagagcaggctggtgga
ggctctcgtgtagttatggaaacattttga
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