Paenibacillus polymyxa SQR-21: PPSQR21_037180
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Entry
PPSQR21_037180 CDS
T03178
Name
(GenBank) pectate lyase family 1,pel
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq00040
Pentose and glucuronate interconversions
ppq01100
Metabolic pathways
ppq02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PPSQR21_037180
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PPSQR21_037180
Enzymes [BR:
ppq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PPSQR21_037180
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GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AHM67356
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Position
4229152..4230435
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AA seq
427 aa
AA seq
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MKKRCSLGIAAVLLFATLAPMGAPAHAASDIGKETLGSKNGWAAFSTGTTGGATATSSNT
FTVTNRKQLVDALGKSSNTTPKIIYVKGTINANVDDNNKALGLNDYKDPKYDFNAYLKAY
DPSTWGKKVPSGTLEDARKASQKNQASRIVIEIPSNTTIVGLGNNAIINGANFQLKKGTD
NVIIRNIEFQDAYDYFPQWDPTDGSTGNWNSEYDSITINGATHVWVDHNTFNDGAHPDSG
NGTFYGQEYQHHDGLLDVINQGDLVTVSYNHFYDHDKTSIIGNSDSKTADEGALRVTLHH
NYYENTVQRTPRVRYGQVHLYNNYYTGDVKRSEYPTLYIWGAGKSSKIFAENNVIDVAGL
SAAKIVTVFGGTALSDTGTLLNGQAVNAGSSAGLSSSVGWKPSLNDKISPSASVKAEVTS
QAGSGKL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagagatgttcactcggaatcgcagccgtgttattgttcgctactctggctcct
atgggtgcacctgctcatgcagcaagcgatattggcaaggagacacttggcagcaaaaac
ggttgggccgccttttctacaggcacgacaggtggagctactgctacttcctccaatact
ttcaccgtaacgaaccgcaaacaacttgtcgatgcgttaggcaaaagcagcaacactaca
cctaaaattatttatgtcaaaggtacaatcaatgccaatgtcgatgacaataataaagcg
ctaggattgaacgattacaaagaccctaagtatgatttcaatgcgtatctcaaggcgtat
gatccgtcgacatggggtaaaaaggttccttctggtacattggaagacgcacgtaaggca
tcacagaagaatcaagctagtcgtatcgttattgaaatcccatccaatacaacgattgtc
ggtctgggcaacaatgctatcattaatggtgcaaacttccaactgaaaaagggtacagac
aacgtcattatccgtaatattgagtttcaggatgcctacgattatttcccgcagtgggac
ccaactgacggcagtacaggcaactggaattcagaatatgacagcattaccattaacgga
gctacgcatgtatgggtggatcacaatacgttcaatgacggggctcaccccgatagcgga
aacggcaccttctacggtcaagaataccaacatcatgatggactgctcgatgtgattaac
cagggtgatctggttaccgtttcatacaatcacttttacgatcatgacaaaacatccatt
atcggcaacagcgacagcaaaacagcagatgaaggggctttacgtgtaaccctgcatcac
aattattatgagaatacagtacaacgcacaccacgcgtacgttatggacaagtccatctc
tataacaattactatacaggtgatgtaaaacgctctgaataccctacactatatatatgg
ggcgcaggcaaatcctccaaaatctttgctgaaaacaatgtcattgacgttgcgggacta
tccgcagccaaaattgtgactgtttttggtgggactgccttgtcagatactggcacactt
ctgaatggacaggccgtaaacgcaggctccagcgcgggtcttagctcctctgtaggctgg
aagccatccttgaacgataaaatttccccatccgccagcgtgaaggcagaggtcacttcc
caagccggttccggcaagctgtaa
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