Paenibacillus polymyxa SQR-21: PPSQR21_041920
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Entry
PPSQR21_041920 CDS
T03178
Symbol
alkA
Name
(GenBank) base excision DNA repair protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPSQR21_041920 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_041920 (alkA)
Enzymes [BR:
ppq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PPSQR21_041920 (alkA)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPSQR21_041920 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
Abp2
F_actin_cap_B
RecR_HhH
Herpes_IE2_3
Motif
Other DBs
NCBI-ProteinID:
AHM67814
LinkDB
All DBs
Position
complement(4743923..4744540)
Genome browser
AA seq
205 aa
AA seq
DB search
METVMTKNFDYGEKEINYLKMVDPVLGTAITQMGKVERVIIPDLFAALVHAIVGQLISAK
AVQTIWTRMQEKLGAITPQNIAVQTAQDIQNFGITMKKAACILNIAQTIEQGLLDLQELY
EFSDTQVIQKLSSLQGIGPWTAEMMLINCMERPDVVSWGDMAIRRGMMKLYHLDTLTKQQ
FEEYRRVYSPYGSVASIYLWSISFR
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggtaatgaccaaaaactttgactatggtgaaaaggaaatcaactacctgaag
atggtagatcccgtacttggtacagctataacgcaaatgggcaaggtagaacgcgtaatc
attcccgacctgtttgcagcgcttgttcatgcgattgtggggcagcttatttccgccaag
gcggttcagaccatatggacaaggatgcaggaaaaattaggagcgatcactccacaaaat
atagccgttcagacagctcaggatattcaaaactttggcatcaccatgaaaaaggcagca
tgtattctgaatatagcccaaacgatcgagcagggattgttggatttacaggagttgtat
gagttttccgatacacaggtgatccagaaattatcctcgctgcaagggataggcccttgg
acggctgaaatgatgctgattaattgcatggaacgtccagacgtcgtcagttggggcgat
atggctattcggcggggaatgatgaagttgtaccatttagatacactgaccaagcagcaa
tttgaggagtatcgccgagtgtattcgccttatggttcagtggcctccatttatttgtgg
agcatttcatttcgttaa
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