Paenibacillus polymyxa SQR-21: PPSQR21_046070
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Entry
PPSQR21_046070 CDS
T03178
Symbol
uvrB
Name
(GenBank) excinuclease ABC, b subunit
KO
K03702
excinuclease ABC subunit B
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPSQR21_046070 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_046070 (uvrB)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPSQR21_046070 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPSQR21_046070 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_19
UvrD-helicase
LSDAT_prok
AAA_7
HEM4
AAA_22
Kinesin
nSTAND_NTPase5
AAA_5
AAA_16
fvmX5
Motif
Other DBs
NCBI-ProteinID:
AHM68191
LinkDB
All DBs
Position
complement(5205419..5207410)
Genome browser
AA seq
663 aa
AA seq
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MSDIVVSDKTFEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTYTIAQTIA
KLNRPTLVIAHNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSS
INEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILS
RLVDIQYQRNDINFVRGTFRVRGDVVEIFPASHGENAIRVELFGDEIERITEINVLTGEL
IGEREHIAIFPASHFVTHEDTMRVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDI
EMMREVGFCSGVENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGD
QARKNVLVEHGFRLPSALDNRPLKFEEFEDKVNQIIYVSATPGPYEMEKCDTMVQQIIRP
TGLLDPIIEVRPSKGQIDDLINEIRQRIEREERVLVTTLTKKMAEDLTDYLKEVGIKVRY
MHSEIKTLERMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSL
IQTIGRAARNSDGRVIMYGDKITDSMDKAIKETERRRAIQIQYNEEHGITPQTIRKKIRD
VIEATKTAESKNDYLPNETGKLSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLEL
RAD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgttgttagcgataagacttttgaaattcagtcggaattccaacctcaa
ggcgatcagccccaggccatttttgaattggtagagggaattgcagaaggaaagaagcat
caaactctattgggtgctacgggaacaggtaagacgtataccattgctcagactattgcc
aagctgaatcggcctacgctggttattgcgcataacaagactttggctgctcaactggca
agtgagtttaaagaattctttccaaacaactcagtcgattattttgtcagctactatgat
tactaccaaccggaagcgtacatcccttcttccgatacgtatattgagaaggattccagc
atcaatgaggagattgataaacttcgccactcagccacaagctctctgtttgagcgtcgt
gacgttattattgtagcgagtgtctcttgcatttatggtttgggttccccgaaagaatat
tcaagcttgctgctctcgcttagagtcggcatggagaaaccccgcaatcagattttgtcc
cgcttggtcgatattcaatatcagcggaacgatatcaacttcgtgcggggtactttccgt
gtacgaggggatgttgttgaaatattcccggcttcccatggagaaaacgcgatacgcgta
gaactgttcggagatgaaattgaacggattaccgaaattaatgtgcttacaggtgaattg
atcggtgaacgtgagcatatcgccattttcccggcatctcacttcgttactcatgaggat
acgatgagggtagcactggtcaacatcgaacgtgaactggaagagcgcttagcagagctg
aaggagcaagggaagctgttagaggcgcaacgtttggagcaacgtacccgctatgatatc
gagatgatgagagaggttggcttttgttccggtgtcgaaaactactcgggtccactgaca
ttccgcgagcgtggagcaacaccatatacactgttggattattttccagatgatatgctg
atcgtcatcgacgaatctcatgttacattgccgcagattcgtgcgatgtataacggggac
caggcgcgtaaaaatgttctcgttgaacatggttttcgtttgccatctgccttggataac
cggccgctgaagttcgaagagttcgaggacaaagtgaatcaaattatctatgtatcggct
actccaggcccgtatgagatggaaaaatgcgatacgatggtgcagcagattatccgtcct
accggtctccttgatcctataattgaggtgcgtccaagcaaaggtcagattgacgatctc
attaatgaaatacggcagcgcatagaacgtgaagaacgggtactggtcaccacactcacg
aagaaaatggctgaagatttgacagactacttaaaagaagtgggcatcaaggttcggtat
atgcactccgagattaagactttggaacggatggccattttgcgggatcttcgtctggga
accttcgatgtgctgatcgggatcaacttgttgcgggaaggtctcgatttgccggaagta
tcgctggttgcgattttggatgcggacaaagaaggcttcctgcgttctgagcgctctctg
attcagacgatcggacgggcagcgcggaatagtgacggacgtgttattatgtatggcgat
aagattaccgattctatggataaagcgattaaggaaacggaacgtcgccgtgcgattcaa
attcaatacaatgaagagcatgggattaccccgcaaaccatccgtaaaaagatacgtgat
gtcattgaagcaaccaagacggcggagtccaagaatgattaccttcctaatgagacgggt
aaactttccaagaaggagcgtcaatccctcattcagcgcctagaagcagaaatgaaggat
gcggccaagaatctacagttcgaacgggccgccgagttgcgtgatgctttgctggaattg
cgggctgattaa
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