Photobacterium profundum: PBPRA0009
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Entry
PBPRA0009 CDS
T00173
Symbol
PLU0002
Name
(GenBank) Putative DNA polymerase III, beta chain
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03030
DNA replication
ppr03430
Mismatch repair
ppr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PBPRA0009 (PLU0002)
03430 Mismatch repair
PBPRA0009 (PLU0002)
03440 Homologous recombination
PBPRA0009 (PLU0002)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppr03032
]
PBPRA0009 (PLU0002)
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA0009 (PLU0002)
Enzymes [BR:
ppr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PBPRA0009 (PLU0002)
DNA replication proteins [BR:
ppr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PBPRA0009 (PLU0002)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PBPRA0009 (PLU0002)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta
DNA_pol3_beta_2
DNA_pol3_beta_3
Motif
Other DBs
NCBI-ProteinID:
CAG18464
UniProt:
Q6LW49
LinkDB
All DBs
Position
1:8790..9890
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AA seq
366 aa
AA seq
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MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE
ADFEVGAVTVPSRKFLDICRGLPDGAKIAVTLEGDRILIRSGRSRYSLSTLPAADFPNIE
DWQSDVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLRSVATDGHRMAVC
AIDLAQELTTKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTSKLVDGR
FPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITANNPEQE
EAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKCDQVRLSLTDANASALVEDCANDEAMYV
VMPIRL
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgtcgaacgcgaacatttattaaagcctttgcagcaggtatctggtgct
ttaggcggtcgtccttctttacctatcttaggtaacattctgcttaaagtagaagaggga
tacctgtcgatgacaggaaccgatttagaagtcgaactgattgcaaaattagcactagaa
gctgattttgaagtcggggcagtgactgtgccttctcgtaagtttctcgacatctgtcgt
ggcttacctgatggtgccaagattgctgttacgctagaaggcgatcgtattttaatccgt
tctggtcgtagtcgttactcactatcgacattgcctgccgctgattttcctaatatcgaa
gattggcagagtgacgttgagttcacgttaccgcaaggtcgcatgagtcagcttatccaa
agcacgcaattttcaatggcacaccaagatgtacgctattacttaaatggtatgttgttt
gaaaccgacggcagccatttacgatcggtcgcgacagatggccaccgtatggcggtgtgc
gcaatcgatttagcgcaagaactgacaacaaagcagatcattgtaccgcgtaaaggtgtc
ttagaactggtgcgcttgcttgataacgccgaagcgatggttgatatccaaatcggtaat
tcaaatattcgagcaaccgtgaataattttgtattcacctcgaagctagtcgatggacgt
tttcctgattaccgccgtgttatgccacaaagcagcaataagtttgttgaagcgagttgt
gacgaattgcgtaaagcgttttcacgtgccgcgatcttatcaaacgaaaaattccgaggt
gtgcgcgttaacttatcaaaaggcgaaatgcgtataaccgccaataaccctgagcaagaa
gaagcggaagagtttcttgatgtcgattatcagggggatgatctagaaatcggatttaac
gttagttatgtattggatgtgcttaacaccttaaaatgtgaccaagtacgtttgtcgcta
accgatgctaatgccagtgcattagttgaagattgcgccaatgatgaagcgatgtatgtt
gtgatgccaattagattataa
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