Photobacterium profundum: PBPRA0558
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Entry
PBPRA0558 CDS
T00173
Symbol
S2815
Name
(GenBank) putative uracil-DNA-glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PBPRA0558 (S2815)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA0558 (S2815)
Enzymes [BR:
ppr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PBPRA0558 (S2815)
DNA repair and recombination proteins [BR:
ppr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PBPRA0558 (S2815)
Prokaryotic type
PBPRA0558 (S2815)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
PAC2
Motif
Other DBs
NCBI-ProteinID:
CAG18981
UniProt:
Q6LUP4
LinkDB
All DBs
Position
1:605801..606484
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AA seq
227 aa
AA seq
DB search
MSHTNTWQDIINQEKQQPYFQDIEQFVSTARSNGKVIFPPEQDVFNAFNSTPLAQVKVVI
LGQDPYHGANQAHGLSFSVLPGIKTPPSLANMYKELATDIPGFQIPLHGYLQSWADQGVL
LLNTVLTVEQSKAHSHAKIGWETFTDKIIDVLDQQSAGIVFVLWGAHAQKKGKTINTDKH
HVLKSAHPSPLSAYRGFFGCKHFSQVNQLLCDMNQSPIDWQPQRIQE
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgagccacacaaatacttggcaagacattatcaatcaagaaaaacaacagccttacttt
caggatattgaacagtttgtgtctactgcccgttctaatggtaaagttattttccctcct
gaacaagatgtttttaatgcatttaattcaaccccattagcccaagtaaaggtcgtaata
ttaggccaagatccctaccacggcgctaatcaagcacatggtttgagtttttctgttttg
cctggcattaaaacacccccatcactcgctaatatgtacaaagaattagccaccgatatc
ccagggtttcaaattcccctgcatggttaccttcaaagttgggcagatcaaggtgttctg
ctattaaatacagtattgaccgtcgagcaaagtaaagcgcattcacatgccaaaattggt
tgggaaacatttacggataaaatcatcgatgtgcttgatcaacagagtgctggtattgtg
ttcgtattgtggggggcgcatgcgcagaagaaaggtaaaacgattaataccgataagcat
catgttttaaaatcggctcacccatcaccgctgtcggcatatcgtggtttctttggttgt
aagcatttctctcaagtgaaccagctattgtgtgacatgaatcaatcaccaattgattgg
cagccccaaaggattcaagagtaa
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