Photobacterium profundum: PBPRA0616
Help
Entry
PBPRA0616 CDS
T00173
Symbol
C3920
Name
(GenBank) putative polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBPRA0616 (C3920)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppr03019
]
PBPRA0616 (C3920)
03016 Transfer RNA biogenesis [BR:
ppr03016
]
PBPRA0616 (C3920)
Enzymes [BR:
ppr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PBPRA0616 (C3920)
Messenger RNA biogenesis [BR:
ppr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PBPRA0616 (C3920)
Transfer RNA biogenesis [BR:
ppr03016
]
Prokaryotic type
tRNA degradation factors
PBPRA0616 (C3920)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
S1_2
KH-I_KHDC4-BBP
S1_RRP5
KH_SLS1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
CAG19037
UniProt:
Q6LUI8
LinkDB
All DBs
Position
1:672632..674755
Genome browser
AA seq
707 aa
AA seq
DB search
MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVN
PEVNPDMITMIATSAALAISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLDLVVSG
TKDAVLMVESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVVNAE
LKARVADKAATRLSDAYQITEKMARYDEVGSIKNDVVASLLAEDETLDERELRGMLSSLE
KHVVRGRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD
AQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF
PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAI
GTHRDDISQFAPRIHTMKINSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATE
GAAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVEK
VSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQNPATVQDEQPQG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccctatcgtaaagactttccagtacggtaaccacacagttaccctagaaactggt
gttatggcacgtcaagcgactgctgctgttatggcaagcatggacgatacgtctgtgttt
gtatctgttgttggtaagaaagcggctgttgaaggccaagacttctttcctctaacagta
aactaccaagagcgtacatacgctgcaggtaaaatccctggtggcttctttaagcgtgaa
ggtcgtccttctgaaggcgaaacgcttactgcacgtctaattgaccgtcctatccgtccg
ttattcccaagtgcattcaaaaacgaagtacaagttattgcgactgtggtttctgtaaac
ccagaagtaaacccagacatgatcactatgatcgcaacgtcggcggcacttgctatttca
ggtctaccgttcaacggccctatcggtgcagcacgtgttggttttattaacgatcaattc
gttcttaacccaagcaacactgagctagaagaaagccgtctagaccttgttgtttctggt
actaaagacgcagttctaatggttgaatcagaagctgatcgcttatctgaagagacaatg
ctacaagctgttgtttatggtcacgaccaacaacaagttgttatcaatgcaatcaacgag
tttgcggctgaagtagcaacgcctgcttgggattggactgcaccagtagtgaatgctgaa
cttaaagcacgcgtggctgataaagctgcaactcgcctttctgatgcataccaaatcact
gaaaaaatggcacgttacgacgaagtgggttctattaagaacgacgttgttgctagcctt
cttgctgaagacgaaacgcttgatgagcgtgaacttcgtggcatgttaagctctcttgag
aagcacgttgtacgtggccgcatcatcgcgggtcacccacgtatcgatggtcgtgaaaaa
gacatggttcgtgcgttagacgtacgcactggtgtacttccacgtactcacggttcttct
ttgttcacacgtggtgaaactcaggcgctagtaactgctacgctgggtactcaacgtgac
gcacaaatcatcgacagcatcatgggtgagaagaaagatcacttccttctacactacaac
ttccctccatactgtgtaggtgagactggtttcgttggttcaccaaagcgtcgtgaaatc
ggccatggtaaattagctaagcgtggtattgcagcagtaatgccttctgttgaagaattc
ccatacacagtacgtgttgtatcggaaatcactgaatctaacggttcatcttcaatggct
tctgtatgtggtacttctctagcgcttatggatgctggtgtgccaattaaagcatctgtt
gcgggtatcgcaatgggtcttgttaaagaaggcgacgatttcgttgttctttctgacatc
cttggtgacgaagatcacctaggtgacatggactttaaagtagcgggtactgacgacggt
atcacagcacttcagatggatatcaagattgaaggtatcacgaaagagatcatgcagatc
gctctaaatcaagctaaaggtgcacgtaagcacatccttagtgtgatggacgatgcaatt
ggcactcaccgtgatgatatctctcagtttgctcctcgtattcatacgatgaagatcaac
tctgacaagattaaagacgttatcggtaaaggtggtgctgttatccgtgcactaactgaa
gaaactggtactacaattgaaatcgaagatgacggtacaatcaagattgcagcaactgaa
ggtgctgcagctaaagaagctattcgtcgtatcgaagaaatcactgctgacgttgaagtt
ggtcgcatctatactggtaaagtaatgcgtatcgtagacttcggtgcattcgtatcagtt
attggtgctaaagaaggcttggtacacatttctcaaatcgctcaagagcgtgtagagaaa
gtatctgaccatctgcaaatgggtcaagaagttcaagttaaagtacttgaaatcgaccgt
cagggtcgtattcgcctaagcatgaaagaagctgttgcagatcaaaaccctgcgacagta
caagacgaacagccacaaggctaa
DBGET
integrated database retrieval system
