Photobacterium profundum: PBPRA1118
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Entry
PBPRA1118 CDS
T00173
Symbol
SF0729
Name
(GenBank) Putative excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ppr
Photobacterium profundum
Pathway
ppr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBPRA1118 (SF0729)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA1118 (SF0729)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PBPRA1118 (SF0729)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PBPRA1118 (SF0729)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAG19529
UniProt:
Q6LT47
LinkDB
All DBs
Position
1:1241088..1243112
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AA seq
674 aa
AA seq
DB search
MSKVFSLSSGFSPAGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTIANVIAESNRPT
FIMAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQ
YTRNDVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECINVFDPLTGAVLQKDLP
RCTIYPKTHYVTPREKILEAIEKIKDELVVRRKQLMDSNKLVEEQRISQRTQFDIEMMNE
LGFCSGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKE
NLVEYGFRLPSALDNRPMKFEEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLL
DPIIEVRPVATQVDDLLSEIRIREVKGERVLVTTLTKRMSEDLAEYLAEHNVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNLEGRAILYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILEL
GKPSSRSRTNKAAQLNRVAESKGTYVNLSPQQLELEIQRLETEMYDLAQNLEFEKAAEAR
DKIHTLRQQFIMNS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagtcttctctctatcttctggtttttcaccagcaggtgatcaacctacagcg
attaatcaattattagaggggcttgattcagggcttgctcatcagactttactgggcgtt
acaggttcaggtaaaacgttcactattgcgaatgtaatagcagaatccaatcgccctacg
tttatcatggcgccgaataagacgttagctgcgcaactctatggcgagatgaaagagttc
tttcctgataatgctgttgaatactttgtttcttattatgattattaccagcctgaagcg
tatgtgccgacaactgatacttttattgaaaaagatgcctctgtaaacgcccatattgaa
caaatgcggctatccgccaccaaagcattattagaacgtcgtgacgttattattattgct
tctgtatctgcaatctatggtttgggcgatcctgattcttacctgaagatgatgttgcat
gtacgccgtggagacatgttaaatcaacgtgatattctccgtcgtctcgctgagttgcaa
tatacgcgcaatgacgtttcctttgagcgtgggcattttcgtgtaagaggggaggtcatc
gacgtttttcctgcggaatcagaacatgatgctattcgtattgaactgtttgacgatgaa
gttgagtgtatcaatgtatttgatcctttaactggcgcagtactccaaaaagatttaccg
cgatgtacgatttatccgaagacgcactatgtaactccccgagaaaaaattctggaagcc
attgaaaaaattaaagatgagctggttgttcgacgcaagcagcttatggatagcaataag
cttgtagaagaacagcggatttcacagcgtacgcagtttgatattgaaatgatgaatgaa
ttaggcttttgctcgggtatcgaaaactattctcgttacttaagtggtcgagaggaaggt
gagccacctcctacattatttgattatttacccgctgacggtttgctcattattgatgag
tctcatgttactgtctcgcaaattggcgccatgtatcgtggtgatcgctctcgcaaagaa
aacctagttgaatacgggtttcgtttaccttcagctcttgataatcgtccaatgaaattt
gaagagtttgcatcattagccccacaaaccatttacgtttcagcaacgccgggtaaatat
gaaatagagcaatcgggtaatgatattgccgaacaggttgttagacctacaggtttactc
gatcctattattgaagtgcgtccggtcgcaacacaagttgatgatctattatctgaaatt
cggatcagagaagtgaaaggtgagcgcgtgttggtaacgacactgactaaacgtatgtct
gaagatttagccgaatatcttgcagaacataatgtcaaagtacgctaccttcattccgac
atcgatactgtcgagcgtgtcgagattattcgtgatttgcgtttaggtgtgtttgatgtg
ttggtgggtatcaacttgcttcgagagggcctcgatattccagaagtgtctttagtggcc
attcttgatgcagacaaagaaggatttttacgttcagagcgttcgttgattcaaacaatt
ggtcgtgcggcacgtaaccttgaaggtcgcgctattctctatggtgacaagatcactggc
tcaatggaacgggcaatctttgaaactaatcgccggcgtgagaagcaagctctccataac
aaaaaaaatggtattactccgcaggggctgaataaaaaagtgggtgatattcttgagctg
ggtaagcctagttctcgttctagaacaaataaagcagcgcagctcaatcgtgttgctgaa
agtaaaggcacttatgtaaatctgtctcctcagcagttagaacttgaaatacagcggcta
gaaacagagatgtatgatttagcgcagaacttagaatttgaaaaagcagccgaagcccgt
gacaaaatacatacgttacgccagcaatttattatgaacagttaa
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