Photobacterium profundum: PBPRA2392
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Entry
PBPRA2392 CDS
T00173
Symbol
ECS1492
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppr
Photobacterium profundum
Pathway
ppr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBPRA2392 (ECS1492)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppr03400
]
PBPRA2392 (ECS1492)
Enzymes [BR:
ppr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBPRA2392 (ECS1492)
DNA repair and recombination proteins [BR:
ppr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PBPRA2392 (ECS1492)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAG20777
UniProt:
Q6LPJ9
LinkDB
All DBs
Position
1:2762500..2765955
Genome browser
AA seq
1151 aa
AA seq
DB search
MKALSLLSLPLPSKKGDNRFIGNLSGAALALSVAELSHAHQGPILAVVPDTQTALRLQPE
ISQFTSVEVNVFPDWETLPYDNFSPHQDITSDRLARLYKLPTQSDGIILVPISTLLQRLT
PRDYLRKHALIVRNGDRLSLDKLRLQLEASGYRHAEQVMEHGEYASRGSLLDLFPMGSNQ
PYRIDFFDDKVDSIRQFDPENQRSTGEIDSINLLPAHEFPTDEIAIENFRMRWRERFEAR
REPESIYQQVSKRTWPAGIEYWQPLFFEKTETLFDYLPDETLLVTLGELEPSVDHFLADA
DHRFDQRRVDPLRPLLEPKELWLTKDEMFRGFKTLPQVRIRHENEPDKAGRYNPTLTPVP
EIIINQQLKEPFAALRRFTEQFKGKIVFSVASEGRREALLDLLARIKMRPIVCASLEEAI
EAPSDYTLVIGAAEQGFILESPSVAFICESDLLGERVNQRRRRDNKKSINADTIIRNLAE
LQVGQPVVHIDHGIGRYQGLQTLEAGGITTEYVMLEYDAGAKLYVPVASLHLISRYSGGA
DDSAPLHKLGGEAWVKARKKAAEKVRDVAAELLDVYAKRELKPGFKFTLDRESYADFCSG
FPFEETHDQALAINSVLSDMCKPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVLV
PTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQIMLDAEEGKIDILIGTHKLLNA
SVKYHDLGLLVVDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAIKTFVREKDDAIIREAVLREIMRGGQVYFLHNEVDSIEKTTEELAKLIPEA
RITFAHGQMRERDLEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTIIMNRADNLGLAQL
HQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGFTLATHDLEIRGAG
ELLGDEQSGQIQSIGFSLFMEMLEQAVEALKEGKESSLDDLLRKQTEVELRLPALLPDDY
IPDINMRLSLYKRIASAIDEQDLNDLKVELIDRFGLLPEATTNLLTVNNLKLKAAAVGIR
RIEAGEKGGYLEFEQDAAINPVFLVGLLQSKPQHYRMEGPTKLKVMAPMTNRKERIKFVD
QLLTQLSENTI
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattatcattactctcactgcccctgccgagtaaaaaaggggataaccgtttc
attggtaacctatctggtgctgctttggcactgtctgtcgctgaactgtctcacgcacat
caaggccctattcttgctgttgtgcctgatacgcaaacagcactgcgcctacagccagaa
attagtcagttcacgtctgtcgaagtgaacgtatttcctgactgggaaacactgccatac
gataatttctcgccgcaccaagatattacgtctgatcgtctggcgcgtttatacaagtta
cccactcagtctgatggcattattctggtgcctattagtaccttattgcagcgtttaaca
ccccgtgattaccttcgcaagcatgctttgattgtacggaatggtgatcgcctatcactt
gataagcttcgattacagcttgaagcatctggctatcgccatgccgagcaagtaatggag
catggcgaatatgccagccgaggttcattactcgatctattcccaatgggtagcaatcaa
ccctatcgtattgacttttttgatgacaaagttgattccattcgccagttcgatcctgaa
aatcagcgttcaacgggtgaaattgatagcatcaatttattaccagctcatgaattccca
acggatgaaattgcgattgaaaatttccggatgcgttggcgtgaacgttttgaagctcga
cgtgagcccgaatcaatctatcagcaagtaagcaaacgtacttggcctgcgggtattgag
tattggcagcctctgttttttgaaaaaactgaaacactcttcgattatttacccgatgaa
accttattagtaacattgggagaattagaaccctccgttgaccattttttagcagatgca
gatcaccgctttgatcaacgtcgtgttgaccccttgcgccctttgttagaacccaaagaa
ttatggctaacaaaagatgagatgttccgcggttttaaaacgttgccacaagttcgtatt
cgtcatgaaaacgaacccgataaagcgggtcgatacaatccaacgttaacaccagtacct
gaaataatcatcaaccaacaacttaaagaaccttttgctgcactacgtcgctttaccgag
caattcaaaggcaaaattgtcttttccgttgcctctgaaggtcgacgtgaagcgttactg
gatctattagctcgtataaaaatgcgcccaatagtgtgcgctagtctagaagaagccatt
gaagcaccaagtgattacacgctggttattggtgctgcagagcaaggctttattcttgaa
tcaccttctgtcgcgtttatttgtgaaagtgatttactcggtgagcgcgttaatcaacgt
cgccgccgtgataataaaaaaagtatcaatgccgatacgattattcgtaatttagcagag
ttgcaagttggtcagcccgtggttcatatcgatcatggcattggtcgttatcagggtctg
caaacattagaagctggtggcataacaactgaatatgtcatgcttgaatacgatgctggt
gcaaagctctatgtaccggttgcatcactgcacctcattagccgttactctggcggtgct
gatgatagtgcgccgctgcataaactggggggcgaagcatgggtcaaagcacgtaaaaaa
gcagctgaaaaagtacgtgatgttgctgcagagttactcgatgtttacgcaaagcgcgaa
ctaaaacctggctttaaattcacgttagatcgagaatcttatgctgatttctgtagtggt
tttccttttgaagagacccacgaccaagccttagcgattaattccgtactttcagacatg
tgtaagcctagagccatggaccgccttgtgtgtggtgacgttggctttggtaaaacggaa
gtcgcgatgcgtgctgcgtttgttgctattgataataacaaacaagtcacggtattagtg
cctaccacattgttggcacagcagcattttgaaaacttccgtgaccgttttgccaatacg
gccgttcgtgttgaagtgctttcacgttttaaaacagcgaaagaacaaaaacagataatg
cttgatgccgaagaaggcaaaattgatatactcatcggcacacataaactacttaacgct
tcagtcaaatatcacgatttaggtttattagtcgttgatgaagagcaccgctttggtgtg
cgtcaaaaagagaaaattaaagccattcgtgctgatattgatattttgaccctcacggca
acaccgattcctcgtacgctcaatatggcaatgagtggtatgcgtgatctatctatcatt
gcaacaccgcctgcacgccgcttagccattaaaacctttgtacgagaaaaagacgacgca
attattcgtgaggctgtactgcgtgaaataatgcgtggtggccaagtgtacttcttgcac
aatgaagtcgacagcatagagaaaaccactgaagaattagccaaactgatcccagaagcg
cgtatcacctttgctcatggtcaaatgcgtgaacgtgatctcgaaaaagtgatgggggat
ttttatcaccagcgcttcaatctactcgtatgtacaaccataatcgaaactggtattgat
attccaacagccaatacgatcatcatgaatcgtgccgacaaccttggtttagcacagtta
caccaacttcgaggtcgtgttggacgatcgcaccaccaagcctatgcctatttattaacg
ccacataaaaaacgcatgacgaaagatgcagtcaaacgtttagaggccatcgaatcactg
gaagatcttggtgctgggttcacattggcaacgcatgaccttgaaattcgtggtgcaggt
gaattattaggtgacgaacaaagtggtcaaattcaatccattggattttcactgttcatg
gaaatgctagagcaagcggttgaagcattgaaagaaggcaaagagtcatcacttgatgat
ctgctacgtaagcagacggaagttgagctacgtctacccgcgttactgcctgatgattac
attcccgatatcaacatgcgtttatcattgtacaagcgcattgccagtgcgattgatgag
caagatttgaacgatttaaaagtcgaactgattgatcggtttggtctattacctgaagca
acaaccaacttgctaacggtaaacaatttaaaattaaaagcagctgcagtcggtattcgc
cgtattgaggcgggtgaaaaaggtggatatcttgaatttgaacaagatgctgccattaac
cctgtttttctcgtcggtttactgcaatcaaagcctcaacattaccgtatggaaggtcca
accaaactaaaagtcatggcaccaatgacaaatcgcaaagaacgcatcaagtttgtggac
cagctactaacccaattatcagaaaacacaatataa
DBGET
integrated database retrieval system
